Gene Information

Name : APA386B_1P66 (APA386B_1P66)
Accession : YP_008379409.1
Strain :
Genome accession: NC_021976
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 54733 - 55623 bp
Length : 891 bp
Strand : -
Note : Integrase, catalytic core, Integrase core domain

DNA sequence : 
ATGACACGCTTCATTGAGGAGCATCGGCAGACATATGGTGTCGGGTCAATCTGCAGGGTTCTGTCGGTTGCACCATCTGC
CTATTATGCTTATCGGGCGAGACAGAAAAATCCCTGTGTGCGCAGCCAGAAAGACAAAGAGCTGTGCGATGACATCTGTA
GAGTGTGGAATGATAATTTCTGCGTCTATGGAGCGCGCAAGGTCTGGCATCAGCTCAAACGCGAGGGCAGGACTATCGCC
CGTTGCACGGTAGAGCGGCTGATGCGCCAGATGGGACTGAAAGGCGTCATGCGTGGCAAGGGTGTCAGAACCACACGGCC
AGATCCGGCGCGGCCCTGTCCACAGGATCTGGTGCGGCGTCAGTTCCATGCACCAGCCCCTAACAGGCTATGGGTTTCGG
ATTTTACTTACGTTTCCACCTGGCAGGGCTTTGTGTATGTGGCCTTCATCATTGATGTATTCGCACGGGTTATTGTGGGC
TGGCGTGTCTCCTCAACGGCTCATACCGACTTCGTGCTGGATGCCCTCGATCAGGCTCTGTGCCAGAGGCGGCCTGAGGA
AAAAGTGACCCACCATTCCGACCGCGGCTGTCAATATGTGTCCATTCGCTACACGCAAAGACTGGCTGAAGCGGGCCTTG
TTGCTTCTGTCGGAAGCGTTGGAGACTCCTATGATAACGCCCTGGCGGAGACCATCAACGGACTTTATAAAACCGAACTC
ATCTATCGGCAGGGACCATGGAAAAACAGGGAAGCTGTTGAACTGGCAACACTTAAATGGGTCGACTGGTTCAATAATCG
GCGGCTCCTGTCCTCCATTGAAAACATCCCGCCAGCAGAAGCCGAAGCACGCTTTTATGCACAACAGAAATCGCATGCAT
TAGCCGCTTAA

Protein sequence : 
MTRFIEEHRQTYGVGSICRVLSVAPSAYYAYRARQKNPCVRSQKDKELCDDICRVWNDNFCVYGARKVWHQLKREGRTIA
RCTVERLMRQMGLKGVMRGKGVRTTRPDPARPCPQDLVRRQFHAPAPNRLWVSDFTYVSTWQGFVYVAFIIDVFARVIVG
WRVSSTAHTDFVLDALDQALCQRRPEEKVTHHSDRGCQYVSIRYTQRLAEAGLVASVGSVGDSYDNALAETINGLYKTEL
IYRQGPWKNREAVELATLKWVDWFNNRRLLSSIENIPPAEAEARFYAQQKSHALAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 8e-59 67
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 4e-62 67
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 3e-62 67
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 5e-69 66
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-76 61
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-77 60
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-77 60
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-77 60
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-77 60
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 3e-75 60
Z1638 NP_287141.1 transposase Not tested TAI Protein 8e-76 60
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 4e-76 60
Z1221 NP_286756.1 transposase Not tested TAI Protein 2e-76 60
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 4e-77 60
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 3e-77 60
Z1198 NP_286733.1 transposase Not tested TAI Protein 8e-76 60
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 8e-75 59
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 8e-75 59
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 8e-75 59
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 5e-75 59
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 8e-53 59
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 7e-73 58
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 4e-58 46
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 4e-45 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APA386B_1P66 YP_008379409.1 transposase VFG1602 Protein 4e-73 58