Gene Information

Name : REMIM1_PE00285 (REMIM1_PE00285)
Accession : YP_008368039.1
Strain :
Genome accession: NC_021909
Putative virulence/resistance : Virulence
Product : type III secretion system FliP/YscR family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 317959 - 318624 bp
Length : 666 bp
Strand : +
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGAGTGAAATTCAACCAGGAATTATAGCACTTCTTGCGGTTACAGCTGGACTTGCTGTGCTGCTCTTAGCAGCCGTCAC
AACGACGGCTTTTATAAAGGTATCAGTCGTTCTATTCCTCGTCCGCAACGCGCTCGGGACACAGACGATACCCCCGAACA
TAGTTCTCTATGCGGCAGCCTTGATTCTCACCCTCTTTATTAGCGCGCCCGTTATTGAACAAACCTATATTCGCATTGCC
GACCCGAAGCTCCGCTATCAAACCTTAGACGATTGGGTAACCGCCGCTGAAGAGGGACGGGAGCCTTTGCGCGACTATCT
CAAGAAGTTCACGAGCGAAGAGCAGCGCCGGTTTTTTCTATCCTCGACCAAACAAGTTTGGCCAGAGGAAATGCGCGCGA
GGACCACACCAGACGATTTCGCCATTCTCGTCCCCTCCTTTCTGATTTCGGAACTCAAGCGCGCCTTCGAAATCGGCTTT
CTTCTTTATCTTCCGTTTATCTGCATCGACCTCATCGTAACAACGATTTTGATGGCCATGGGCATGTCAATGGTTTCACC
GACGGTTATAGCTGTCCCTTTTAAGCTGTTTCTATTCGTCACCATTGACGGTTGGTCACAACTAATGCACGGGCTTGTGT
TGAGTTACGCAATATCTGGAGGTTGA

Protein sequence : 
MSEIQPGIIALLAVTAGLAVLLLAAVTTTAFIKVSVVLFLVRNALGTQTIPPNIVLYAAALILTLFISAPVIEQTYIRIA
DPKLRYQTLDDWVTAAEEGREPLRDYLKKFTSEEQRRFFLSSTKQVWPEEMRARTTPDDFAILVPSFLISELKRAFEIGF
LLYLPFICIDLIVTTILMAMGMSMVSPTVIAVPFKLFLFVTIDGWSQLMHGLVLSYAISGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 7e-45 53
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 5e-39 49
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 4e-39 49
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 5e-39 49
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 5e-39 49
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-39 49
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 5e-39 49
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 5e-39 49
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-39 49
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-35 47
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-37 44
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-37 44
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-37 44
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 7e-38 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-32 44
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 3e-32 43
escR CAC81847.1 EscR protein Virulence LEE II Protein 9e-32 43
escR CAI43889.1 EscR protein Virulence LEE Protein 9e-32 43
escR AAC38369.1 EscR Virulence LEE Protein 6e-31 43
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-31 43
unnamed AAL06354.1 EscR Virulence LEE Protein 1e-31 43
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-31 43
escR AAC31528.1 L0049 Virulence LEE Protein 1e-31 43
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-31 43
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 1e-31 43
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-31 43
escR AAK26700.1 EscR Virulence LEE Protein 9e-32 43
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-31 43
escR AAL57527.1 EscR Virulence LEE Protein 9e-32 43
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-30 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-30 42
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 9e-33 41
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 8e-31 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 8e-31 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 7e-33 41
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 6e-28 41
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 6e-28 41
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 6e-28 41
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 6e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
REMIM1_PE00285 YP_008368039.1 type III secretion system FliP/YscR family protein VFG0188 Protein 4e-45 53
REMIM1_PE00285 YP_008368039.1 type III secretion system FliP/YscR family protein VFG0394 Protein 4e-42 49
REMIM1_PE00285 YP_008368039.1 type III secretion system FliP/YscR family protein VFG0044 Protein 1e-43 48
REMIM1_PE00285 YP_008368039.1 type III secretion system FliP/YscR family protein VFG1773 Protein 2e-33 43
REMIM1_PE00285 YP_008368039.1 type III secretion system FliP/YscR family protein VFG0827 Protein 5e-32 43
REMIM1_PE00285 YP_008368039.1 type III secretion system FliP/YscR family protein VFG0715 Protein 3e-31 43
REMIM1_PE00285 YP_008368039.1 type III secretion system FliP/YscR family protein VFG1012 Protein 2e-33 41
REMIM1_PE00285 YP_008368039.1 type III secretion system FliP/YscR family protein VFG0551 Protein 2e-28 41