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Name : kdsB (REMIM1_CH00139) Accession : YP_008362942.1 Strain : Rhizobium etli Mim1 Genome accession: NC_021905 Putative virulence/resistance : Virulence Product : 3-deoxy-manno-octulosonate cytidylyltransferase Function : - COG functional category : - COG ID : - EC number : 2.7.7.38 Position : 142189 - 142944 bp Length : 756 bp Strand : - Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS DNA sequence : ATGGGTGATTCAAATTTCGACGACGTGCTTGTATTGATCCCGGCACGGATGGCCTCCACTCGGCTTCCGGGCAAGCCGCT CGCCGACATTTGCGGACTGCCGATGATCGTGCAGGTGGCGATGCGCGCAAAAGAAGCCGAAATCGGCCGGGTCGTCGTCG CCGTCGACGACCCGCAGGTGTTCGACACGGTGGCCGCCGCCGGCTTCGAAGTCGTCATGACCAGCAAGGATCATCAATCC GGCTCCGACCGCATCTTCGAGGCGCTGAAGAAGATCGATCCGGACGGCAAGGCAAAGTTCATCGTCAACGTCCAGGGCGA CCTGCCGACGATCGAGCCGGAAACGGTGCGGGCGGCCTTGCGCCCCCTCGAGAACGAAGCGGTCGATATCGGCACGCTGA CCATCGAAATCGATAATGAGGAGGACAAGACCGCGCCGCACATCGTCAAGGTCATCGGCTCGCCGATTTCCGACACCCGC CTGCGCGGCCTCTACTTCACTCGTGCGACGGCGCCATACGGCAAGGGGCCGCTTTACCATCATATCGGCCTCTATGCCTA CCGGCGCGCTGCGCTCGAACGGTTCGTCTCACTCGGCCCGTCGACGCTTGAAAGGCGAGAATCGCTGGAGCAGCTGCGGG CACTGGAGGCTGGCATGCGCATCGATGCCGAGATCGTTGACACGGTTCCGCTCGGTGTCGATACTCCGGCCGACCTCGAA AAAGCGCGGCGAATCCTCTCTGCACGGCAGAATTGA Protein sequence : MGDSNFDDVLVLIPARMASTRLPGKPLADICGLPMIVQVAMRAKEAEIGRVVVAVDDPQVFDTVAAAGFEVVMTSKDHQS GSDRIFEALKKIDPDGKAKFIVNVQGDLPTIEPETVRAALRPLENEAVDIGTLTIEIDNEEDKTAPHIVKVIGSPISDTR LRGLYFTRATAPYGKGPLYHHIGLYAYRRAALERFVSLGPSTLERRESLEQLRALEAGMRIDAEIVDTVPLGVDTPADLE KARRILSARQN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsU | CAE85213.1 | KpsU protein | Virulence | PAI V 536 | Protein | 2e-33 | 44 |
| kpsU | AAZ04469.1 | CMP-KDO synthetase | Virulence | PAI I APEC-O1 | Protein | 5e-32 | 43 |
| kpsU | YP_854332.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | Not tested | PAI I APEC-O1 | Protein | 6e-32 | 43 |
