Gene Information

Name : phoP (REMIM1_CH01290)
Accession : YP_008364053.1
Strain : Rhizobium etli Mim1
Genome accession: NC_021905
Putative virulence/resistance : Virulence
Product : virulence response regulator PhoP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1293284 - 1293955 bp
Length : 672 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCATCCTGGTAATCGAAGACGACGTCAATCTGAACCGGCAGCTCACCGACACGCTGAAGGAGGCGGGCTATGTCGT
CGATCAGGCATTCGACGGCGAGGAAGGCCATTTCCTCGGCGACACCGAACCCTATGACGCCATCATCCTCGATATCGGCT
TGCCTGAGATGGACGGCGTCACCGTGCTGGAAAAATGGCGCGGCGCCGGCCGCGGCATGCCGGTTCTGATCCTGACGGCG
CGCGACCGCTGGAGCGACAAGGTCGCCGGCATCGACGCCGGCGCCGACGACTATGTCACCAAGCCCTTTCACGTCGAGGA
AGTTCTGGCGCGCATTCGGGCGTTGATCCGGCGTGCAGCCGGCCATGCTTCCTCCGAGATCATCTGCGGACCGGTGCGGC
TCGATACCAAATCCTCGAAGGCGACGGTCAACGGCGCGGCGCTGAAGCTGACCTCGCACGAATATCGCCTGCTCGCCTAT
CTCATGCATCACATGGGCGAGGTCGTCTCGCGCACGGAATTGGTCGAGCACATGTACGACCAAGATTTCGACCGCGATTC
CAATACGATCGAGGTCTTCGTCGGCCGTCTGCGCAAGAAGATGGGCGTCGACTTGATCGAAACGGTGCGCGGTCTCGGCT
ACCGCATCCAAGCGCCGAAACATGCGAATTAA

Protein sequence : 
MRILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGVTVLEKWRGAGRGMPVLILTA
RDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAAGHASSEIICGPVRLDTKSSKATVNGAALKLTSHEYRLLAY
LMHHMGEVVSRTELVEHMYDQDFDRDSNTIEVFVGRLRKKMGVDLIETVRGLGYRIQAPKHAN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-24 43
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-25 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoP YP_008364053.1 virulence response regulator PhoP CP000647.1.gene1136. Protein 3e-36 46
phoP YP_008364053.1 virulence response regulator PhoP NC_002516.2.879194.p Protein 6e-39 46
phoP YP_008364053.1 virulence response regulator PhoP BAC0530 Protein 2e-36 46
phoP YP_008364053.1 virulence response regulator PhoP CP001918.1.gene2526. Protein 9e-36 45
phoP YP_008364053.1 virulence response regulator PhoP CP001138.1.gene1939. Protein 1e-36 45
phoP YP_008364053.1 virulence response regulator PhoP CP004022.1.gene1005. Protein 4e-40 44
phoP YP_008364053.1 virulence response regulator PhoP NC_002695.1.913289.p Protein 7e-36 44
phoP YP_008364053.1 virulence response regulator PhoP CP000034.1.gene2022. Protein 2e-36 44
phoP YP_008364053.1 virulence response regulator PhoP BAC0111 Protein 9e-31 43
phoP YP_008364053.1 virulence response regulator PhoP BAC0347 Protein 6e-28 42
phoP YP_008364053.1 virulence response regulator PhoP BAC0197 Protein 2e-28 41
phoP YP_008364053.1 virulence response regulator PhoP BAC0308 Protein 1e-25 41
phoP YP_008364053.1 virulence response regulator PhoP BAC0487 Protein 1e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoP YP_008364053.1 virulence response regulator PhoP VFG0475 Protein 1e-36 45
phoP YP_008364053.1 virulence response regulator PhoP VFG0596 Protein 1e-25 42
phoP YP_008364053.1 virulence response regulator PhoP VFG1390 Protein 7e-26 41