Gene Information

Name : tetA-1 (REMIM1_CH01048)
Accession : YP_008363821.1
Strain : Rhizobium etli Mim1
Genome accession: NC_021905
Putative virulence/resistance : Resistance
Product : tetracycline resistance protein TetA 1
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1084485 - 1085675 bp
Length : 1191 bp
Strand : -
Note : -

DNA sequence :
ATGACAAGATCCCTTATCGTCATCTTCACCGCCATTGTCCTCGATGCCGTCGGCATCGGGCTGATTTTCCCGATCCTGCC
GTCGCTGCTGCAGGAGATCACCCATGCCCAAAACGTCGCGCCCACGATCGGCGCGATGACGGCGCTCTACGCGTTGATGC
AGTTCATCTTCGCCCCGGTGCTCGGGGCGCTGAGCGACCGGCTCGGCCGCCGCCCGGTGCTGCTGATTTCGCTGGCCGGC
GCGGCCGTCAACTATCTCTTCCTCGCCTTGGCGCCCAATCTGACCCTGCTCTTCGTCGGCCGGGCGATCGCCGGGCTGAC
GAGCGCCAATATCTCGGTGGCGACAGCCTATATCACCGATATCTCGCCGGAGGAGAAACGCGCCCGCCGCTTCGGCCTGT
TCAACGCCATGTTCGGCCTCGGCTTCATCATCGGCCCGGTCGCCGGCGGCGTGCTCGGCGATCACTGGCTGCGGCTGCCC
TTCCTCGCCGCCGCCGTGCTCAACGGCGCCAACCTGCTGCTCGCCGTCTTCATCCTGCCGGAATCGCGCCCGGGCAGCCG
TGAGATGATCGATCTTGCGGCGCTCAATCCGCTGAAACCGCTGCGCTCGGTGCTGGAGGTCAAAAGCCTGCTGCCGATCG
TCATCCTGTTCTTCATCTTCAGCGCCACCGGCGAGGCCTATGGCACCTGCTGGGCGCTCTGGGGCAGCGACGCCTTCCAC
TGGAACGGGCTGTCGATCGGCCTTTCGCTGGGCGCCTTCGGCATCTGCCAGACGCTCGCCCAGGCGCTGCTGCCCGGACC
GGCCGTCAGGCTGCTCGGCGAACGCGGCGCGATCCTCGTGGGTGTTGCCGGCGTCTCGCTCGCGCTCACCGTCATGGCCT
TTGCCGGCCAGGGCTGGATGATCTTCGCCGTCATGCCGGTCTTCACCCTCGGCGGCATCGGCGTACCGGCGCTGCAATCG
CTGGCGACCCGGCAGGTCGACGAGAACAGCCAGGGCCAGTTCCAGGGCGTGCTGGCCTCAGTCGTCAGCCTCGCCTCGAT
CGCAGCACCGCTCGGCTTTTCCAGCCTCTATTTCCTCGTCCGAGAGGAATGGCCGGGCGCCATCTGGCTATCGGTCGTCG
CCGTCTACGCGCTCACCGTGCCGCTGGTTCTGGGGTTGCGACTGAAGACGGCGGCGCTGGTTGCGGGCTGA

Protein sequence :
MTRSLIVIFTAIVLDAVGIGLIFPILPSLLQEITHAQNVAPTIGAMTALYALMQFIFAPVLGALSDRLGRRPVLLISLAG
AAVNYLFLALAPNLTLLFVGRAIAGLTSANISVATAYITDISPEEKRARRFGLFNAMFGLGFIIGPVAGGVLGDHWLRLP
FLAAAVLNGANLLLAVFILPESRPGSREMIDLAALNPLKPLRSVLEVKSLLPIVILFFIFSATGEAYGTCWALWGSDAFH
WNGLSIGLSLGAFGICQTLAQALLPGPAVRLLGERGAILVGVAGVSLALTVMAFAGQGWMIFAVMPVFTLGGIGVPALQS
LATRQVDENSQGQFQGVLASVVSLASIAAPLGFSSLYFLVREEWPGAIWLSVVAVYALTVPLVLGLRLKTAALVAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 2e-65 49
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 2e-65 49
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 3e-65 49
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 2e-65 49
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 2e-65 49
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 3e-65 49
tetA CAJ77034.1 Tetracycline resistance protein Not tested AbaR1 Protein 2e-53 43
tet(G) AAK02051.1 tetracycline resistance protein Not tested SGI1 Protein 2e-51 43
tetA(G) ABZ01843.1 TetA(G) Not tested SGI2 Protein 2e-51 43
tetA(G) AGK06974.1 TetA(G) Not tested SGI1 Protein 2e-51 43
tetA(G) AGK07104.1 TetA(G) Not tested SGI1 Protein 2e-51 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tetA-1 YP_008363821.1 tetracycline resistance protein TetA 1 NC_011586.7043399.p0 Protein 2e-95 61
tetA-1 YP_008363821.1 tetracycline resistance protein TetA 1 NC_011595.7059241.p0 Protein 6e-96 61
tetA-1 YP_008363821.1 tetracycline resistance protein TetA 1 NC_010410.6003291.p0 Protein 5e-96 61
tetA-1 YP_008363821.1 tetracycline resistance protein TetA 1 NC_009085.4918440.p0 Protein 4e-89 60
tetA-1 YP_008363821.1 tetracycline resistance protein TetA 1 AF090987.gene.p01 Protein 3e-70 51
tetA-1 YP_008363821.1 tetracycline resistance protein TetA 1 Y19114.gene.p01 Protein 4e-67 49
tetA-1 YP_008363821.1 tetracycline resistance protein TetA 1 AF534183.gene.p01 Protein 1e-65 49
tetA-1 YP_008363821.1 tetracycline resistance protein TetA 1 NC_010410.6002597.p0 Protein 1e-65 49
tetA-1 YP_008363821.1 tetracycline resistance protein TetA 1 CP001485.1.gene2821. Protein 1e-65 49
tetA-1 YP_008363821.1 tetracycline resistance protein TetA 1 AY264780.2.gene3.p01 Protein 2e-70 48
tetA-1 YP_008363821.1 tetracycline resistance protein TetA 1 NC_011586.7045189.p0 Protein 8e-59 48
tetA-1 YP_008363821.1 tetracycline resistance protein TetA 1 X75761.gene.p01 Protein 3e-64 48
tetA-1 YP_008363821.1 tetracycline resistance protein TetA 1 AY743590.gene.p01 Protein 1e-68 46
tetA-1 YP_008363821.1 tetracycline resistance protein TetA 1 NC_010410.6002612.p0 Protein 1e-53 43
tetA-1 YP_008363821.1 tetracycline resistance protein TetA 1 AF133139.gene.p01 Protein 2e-52 43
tetA-1 YP_008363821.1 tetracycline resistance protein TetA 1 AF133140.gene.p01 Protein 1e-53 43
tetA-1 YP_008363821.1 tetracycline resistance protein TetA 1 Y19116.gene.p01 Protein 3e-48 42
tetA-1 YP_008363821.1 tetracycline resistance protein TetA 1 AJ420072.gene.p01 Protein 1e-52 42
tetA-1 YP_008363821.1 tetracycline resistance protein TetA 1 L06940.gene.p01 Protein 6e-50 41