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Name : SN31241_6420 (SN31241_6420) Accession : YP_008358560.1 Strain : Salmonella enterica USMARC-S3124.1 Genome accession: NC_021902 Putative virulence/resistance : Virulence Product : Fimbrial usher protein Function : - COG functional category : - COG ID : - EC number : - Position : 669408 - 671594 bp Length : 2187 bp Strand : + Note : fimbrial outer membrane usher protein PRK15304; Fimbrial usher protein of Salmonella enterica subsp. enterica UniRef RepID=G4C9M0_SALIN; overlaps CDS with the same product name DNA sequence : TTGTTACTGAGTATTCCACAGATTGCGCTGCGTCCTCATTATACAGGTATCGCACCTCAGGCACTTTGGAATGATGGTAT CCCTGCATTTTTGATGGATTACCAGGCGAGTTCTTTTCGTTCTAGCTATCGTAGTAATGGAGCAACATTAAACACAAACG GTATGGATGTTCAGTTATTGCCTGGCTTGAATTTTGGGGCGTGGCGTTTACGTAACCTGACCACCTGGCAGAAGCAGAAC TCACAGAAGGGAAAATGGCAGACCTCCTATACCTATGCCGAACGTGGGCTGTATAGCCTGAAAAGCCGTTTAACTTTGGG TGACCGATTCACTCCATCCGATGTATTTGACAGCGTTCCGTTTCGCGGTGGGATGATTGGATCTGATGATTCCATGGTGC CCTATAGCCAGCGAGCATTTGCGCCGGTAGTGCAGGGAGTCGCCCTGACACAAGCACGTATTGAAGTTAAACAGAACGGC TATGTGATCTATAACACTACAGTGGCACCAGGCCCCTTTGCTTTGTCGGACCTGCCTGGTGTTAATGGAGGTGGTGATTT GCAGGTAACGGTTTTCGAGGCGGATGGAACCCGTCAGATCTTTACCGTGCCCTATACCACGCCAGCGATTGCGTTACGCC AGGGGTACCTGAAATACAACGTAATGATGGGGCAATATCGCTCTGCGGATACGTCGGTCGATAAAGAGCCTGTTGGTCAG GCCACCATCATGTACGGTTTACCCTGGAACTTAACGGCTTACAGTGGGGGACAATGGGCCAGTCATTACCAGGCGGGCAC GTTGGGATTAGGAGTTTCCCTGGGAGCCTTTGGTGCAGTATCGGTGGACAGTACATTATCCCGCGGACAGAAGCGGAATC AGGATGTAGAGCGTGGGCAGAGCTGGCGTGTTCGTTATAGTAAGTCATTTGAAAGCACCAATACCGGGTTTACGCTGGCC AGTTATCAGTATGCGTCGCCAGGTTATAACACATTATCTGGGGTACTGGACTCTTATCGCTCGGGTGAGGCCTGGCCCTC AAAGGAATACTGGTATCCAGGGGCGGGGTACCAATCTTCCTGGAATAACAATAATTTTGCAGATAAACGAAAGTCACGTA CCAGTGTGACGTTGAATCAGCCGTTGGGTGAATGGGGTGCACTTTATTTTAGTGGAAGTAGAGAAGATTACTGGAATCGC TCGCAGAGTCAAAATGAGGTGTCAGCACGTTACTCTGGCCCAATGATACAGGGCATTTCCTGGTCAGTAGACTGGACCCA ACGTAAATGGAATTACTCCATCTATCGTGGAAATAACGACAATAAGACTGAGCAGTCTATTAACCTGTGGATTAACGTAC CGTTAAATCGTTGGCTGGGAGGCAATACCAGTGTTTCTTACCAGATGCAAAACAGAACAAACCAGGGCACGTTACATAAC ATGGGATTGAATGGTTATGCCTTTGACCAGCGATTGTACTGGAATGTAAGTGAACAGATAGCACAGGGGGGAACAGGTAG CAACCAGAACAGCAGTGACCTGAACTTACGCTGGAATGGTACCTACGGTGAAATCAGTGGGGGATATGGCTACCGTAAAA ACGGTAATCAGGTAAATGCCGGGGTTCAGGGAAGTATGGTTGTTCACCGGGATGGCGTGACGTTTGGGCAACGTCTGGGG AAAACGGCCGCCCTGATTAAAGCGCCCGATGCCAGTGGTGTCTCGGTTATTAATGCTGCAGGGGTTAAAACAGATTTTCG TGGTTATACCACCCTGGGGAACCTGGCTCCGTACCAGGAGAATATCATCAGTTTGAATCCGGTAACTCTGCCAGCAAATG TGGCGATACCGCAAACAGATACCAGGGTAGTGCCAACAGAAGGAGCTATTATTCCGGCGAGTTTTGCGACACGGGTTGGT GGGCGTGCACTGATTACACTGACGCAGGTGAATGGTAAGCCTGTTCCCTTCGGGGCTGTAGCCAGCCTTGTGGGCCAGGA GGATACCCGGTGGGATACTGGTATTGTCGGAGATAGTGGTGACGTATATATGAGCGGTTTACCCGAAAAAGGGCAACTTC AGGTGATGTGGGGTAACGGGCAGCAGCAACACTGTCGGGCCGACTATCAGTTATTGAAAAGTGACGAAATTGCAGGTGTG TCAAATCTGAAGGCATTGTGCCGGTAA Protein sequence : MLLSIPQIALRPHYTGIAPQALWNDGIPAFLMDYQASSFRSSYRSNGATLNTNGMDVQLLPGLNFGAWRLRNLTTWQKQN SQKGKWQTSYTYAERGLYSLKSRLTLGDRFTPSDVFDSVPFRGGMIGSDDSMVPYSQRAFAPVVQGVALTQARIEVKQNG YVIYNTTVAPGPFALSDLPGVNGGGDLQVTVFEADGTRQIFTVPYTTPAIALRQGYLKYNVMMGQYRSADTSVDKEPVGQ ATIMYGLPWNLTAYSGGQWASHYQAGTLGLGVSLGAFGAVSVDSTLSRGQKRNQDVERGQSWRVRYSKSFESTNTGFTLA SYQYASPGYNTLSGVLDSYRSGEAWPSKEYWYPGAGYQSSWNNNNFADKRKSRTSVTLNQPLGEWGALYFSGSREDYWNR SQSQNEVSARYSGPMIQGISWSVDWTQRKWNYSIYRGNNDNKTEQSINLWINVPLNRWLGGNTSVSYQMQNRTNQGTLHN MGLNGYAFDQRLYWNVSEQIAQGGTGSNQNSSDLNLRWNGTYGEISGGYGYRKNGNQVNAGVQGSMVVHRDGVTFGQRLG KTAALIKAPDASGVSVINAAGVKTDFRGYTTLGNLAPYQENIISLNPVTLPANVAIPQTDTRVVPTEGAIIPASFATRVG GRALITLTQVNGKPVPFGAVASLVGQEDTRWDTGIVGDSGDVYMSGLPEKGQLQVMWGNGQQQHCRADYQLLKSDEIAGV SNLKALCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| afaC | AAD44022.2 | AfaC | Virulence | PAI-I AL862 | Protein | 3e-172 | 53 |
| afaC | ADD91743.1 | putative AfaC-VIII usher protein | Not tested | PAI-I AL862 | Protein | 2e-174 | 53 |
| safC | NP_454907.1 | outer-membrane fimbrial usher protein | Not tested | SPI-6 | Protein | 1e-169 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SN31241_6420 | YP_008358560.1 | Fimbrial usher protein | VFG0853 | Protein | 5e-177 | 53 |
| SN31241_6420 | YP_008358560.1 | Fimbrial usher protein | VFG0944 | Protein | 1e-170 | 53 |
| SN31241_6420 | YP_008358560.1 | Fimbrial usher protein | VFG0849 | Protein | 6e-163 | 50 |
| SN31241_6420 | YP_008358560.1 | Fimbrial usher protein | VFG0857 | Protein | 6e-164 | 49 |
| SN31241_6420 | YP_008358560.1 | Fimbrial usher protein | VFG0419 | Protein | 1e-143 | 43 |
