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Name : SN31241_40600 (SN31241_40600) Accession : YP_008361975.1 Strain : Salmonella enterica USMARC-S3124.1 Genome accession: NC_021902 Putative virulence/resistance : Virulence Product : outer membrane usher protein yfcU Function : - COG functional category : - COG ID : - EC number : - Position : 4106419 - 4109064 bp Length : 2646 bp Strand : + Note : fimbrial outer membrane usher protein SteB PRK15273; outer membrane usher protein yfcU of Gammaproteobacteria UniRef RepID=YFCU_ECOLI DNA sequence : ATGCTTCTAAGCGTCTCCCCTTATAGCGCGTCAGGCAAAGACATCGAATTTAATACCGATTTCCTCGATGTAAAAAATCG CGATAACGTTAACATTGCACAGTTTTCTCGTAAGGGTTTTATTCTGCCAGGCGTCTACCTTTTACAAATTAAAATTAACG GACAGACTCTGCCGCAGGAATTTCCTGTTAACTGGGTTATTCCAGAACATGATCCACAAGGAAGTGAGGTTTGCGCAGAA CCAGAATTAGTTACGCAATTGGGTATAAAGCCGGAACTCGCGGAAAAACTCGTCTGGATAACGCACGGCGAACGACAATG TCTGGCGCCAGATTCACTGAAAGGCATGGATTTTCAGGCCGACCTGGGGCACTCCACGCTGTTGGTGAATTTACCCCAGG CGTATATGGAATACAGCGATGTCGACTGGGACCCACCCGCCCGCTGGGATAATGGTATTCCCGGCATCATTCTGGATTAC AACATTAATAATCAGCTCCGCCACGATCAAGAAAGCGGCAGCGAAGAGCAAAGCATCAGCGGCAACGGGACGTTAGGCGC GAACCTGGGCGCATGGCGACTGCGGGCCGACTGGCAGGCCAGCTACGACCATCGTGACGATGACGAGAACACTTCCACTC TCCACGATCAGAGCTGGAGCCGCTACTACGCCTATCGCGCACTACCGACGCTCGGGGCCAAACTTACGCTGGGCGAAAGC TATCTCCAGTCCGATGTTTTCGACAGCTTTAACTATATCGGTGCCAGCGTCGTTTCTGACGATCAGATGCTGCCGCCGAA ACTGCGCGGCTATGCGCCGGAGATCGTGGGTATTGCGCGCTCTAATGCAAAAGTCAAAGTCTCCTGGCAGGGGCGCGTAC TGTATGAAACGCAGGTGCCCGCAGGACCGTTCCGTATTCAGGATCTCAACCAGTCCGTTTCCGGTACGTTGCACGTCACC GTGGAAGAGCAGAACGGTCAGACCCAGGAGTTTGACGTTAACACCGCATCGGTTCCCTTCCTGACGCGCCCCGGCATGGT GCGCTACAAGATGGCGCTGGGCCGCCCGCAGGACTGGGATCATCACCCTATTACCGGCACATTCGCCTCGGCGGAAGCTT CGTGGGGGGTCACCAACGGCTGGTCGCTATATGGCGGCGCAATTGGAGAAAGCAGCTATCAGGCCGTGGCGTTGGGAAGC GGTAAGGATCTTGGCGTGGTGGGCGCGGTGGCGGTTGACATTACGCACTCCATCGCCCACATGCCGCAAGACGACGGGTT TGACGGCGAAACGCTGCAGGGTAACTCATATCGCATCAGCTACTCCCGTGACTTTGATGAAATCGACAGCCGACTAACCT TTGCCGGATACCGCTTCTCAGAAAAGAACTTTATGAGCATGAGCGACTATCTGGATGCGAAAACCTATCATCATCTCAAT GCCGGTCACGAAAAAGAACGCTATACGGTCACCTATAACCAGAACTTCCGTGAACAGGGCATGAGCGCCTATTTCAGCTA CTCACGCAGTACCTTCTGGGACAGCCCGGATCAGAGTAACTATAACCTGTCTCTTTCCTGGTACTTCGACTTAGGGTCGA TAAAAAATCTCAGTGCGTCGCTGAACGGCTATCGCAGCGAATATAACGGTGATAAAGATGATGGCGTCTATATCTCGCTG TCTGTTCCCTGGGGCAATGATTCCATCAGCTACAACGGTACGTTTAACGGTAGTCAACACCGTAATCAGCTCGGCTATTC CGGCCACAGCCAGAACGGCGATAACTGGCAGCTTCACGTCGGGCAGGATGAACAAGGCGCACAGGCAGACGGTTATTACA GCCATCAGGGCGCGCTGACGGACATCGATCTGAGCGCGGATTATGAAGAAGGATCGTACCGTTCGCTGGGCATGTCGCTG CGCGGCGGCATGACGCTGACCACCCAGGGCGGCGCGCTACACCGGGGAAGTTTAGCGGGCAGCACACGTTTGCTGGTTGA TACCGACGGCATTGCGGACGTCCCCGTTAGCGGTAACGGCTCGCCAACCTCAACCAACATTTTCGGCAAGGCCGTGATTG CGGATGTCGGAAGCTATTCGCGCAGCCTGGCGCGTATCGATCTGAACAAATTGCCGGAGAAGGCGGAAGCTACTAAGTCG GTTGTGCAGATCACGCTCACCGAAGGCGCCATCGGCTACCGTCACTTTGACGTGGTCAGCGGCGAGAAAATGATGGCGGT TTTCCGGCTGGCAGACGGCGACTTCCCACCGTTCGGCGCCGAAGTGAAAAACGAGCGCCAGCAGCAGTTGGGCCTGGTGG CCGATGACGGCAACGCGTGGCTGGCGGGCGTAAAAGCCGGGGAAACATTGAAAGTATTCTGGGACGGCGCGGCGCAGTGT GAAGCATCACTCCCGCCCACGTTTACACCGGAGCTATTGGCTAACGCGCTATTGCTGCCGTGCAAAATTCTGGAAGGTCA GCCCCCCACCGCACCGCAGAAAAGTTCTCCGCTGCCTGCGCAACCGCTAATCCAGGAACATACGCAAACCGATGGCCAAC CGGCCGCGCCGGTGGCGACAACCACTCAAACCCCGCCCATACCGCTGGCTGACAACCATGCGGTGAATCGCAAGGATATG GAATAA Protein sequence : MLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAE PELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDY NINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGES YLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVT VEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESSYQAVALGS GKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLN AGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISL SVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSL RGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKS VVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQC EASLPPTFTPELLANALLLPCKILEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDM E |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 2e-172 | 46 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 2e-168 | 45 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 1e-166 | 45 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 7e-167 | 45 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 4e-168 | 45 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 2e-168 | 45 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 2e-168 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SN31241_40600 | YP_008361975.1 | outer membrane usher protein yfcU | VFG1548 | Protein | 1e-168 | 45 |
| SN31241_40600 | YP_008361975.1 | outer membrane usher protein yfcU | VFG0884 | Protein | 2e-168 | 45 |
| SN31241_40600 | YP_008361975.1 | outer membrane usher protein yfcU | VFG0895 | Protein | 1e-168 | 45 |
