Gene Information

Name : SN31241_24690 (SN31241_24690)
Accession : YP_008360385.1
Strain : Salmonella enterica USMARC-S3124.1
Genome accession: NC_021902
Putative virulence/resistance : Virulence
Product : Type III secretion low calcium response chaperone LcrH/SycD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2508793 - 2509266 bp
Length : 474 bp
Strand : +
Note : pathogenicity island 2 chaperone protein SscA PRK15363; Type III secretion low calcium response chaperone LcrH/SycD of Salmonella enterica UniRef RepID=B4TUV9_SALSV

DNA sequence :
ATGAAAAAAGACCCGACCCTACAACAGGCACATGACACGATGCGGTTTTTCCGGCGTGGCGGCTCGCTGCGTATGTTGTT
GGATGACGATGTTACACAGCCGCTTAATACTCTGTATCGCTATGCCATGCAGCTTATGGAGGTAAAAGAGTTCGCCGGCG
CAGCGCGACTTTTTCAATTGTTGACGATATATGATGCCTGGTCATTTGACTACTGGTTTAGGTTAGGGGAATGCTGCCAG
GCTCAAAAACATTGGGGGGAAGCGATATACGCTTATGGACGCGCGGCACAAATTAAGATTGATGCGCCGCAGGCGCCATG
GGCCGCAGCGGAATGCTATCTCGCGTGTGATAACGTCTGTTATGCAATCAAAGCGTTAAAGGCCGTGGTGCGTATTTGCG
GTGAGGTCAGTGAACATCAAATTCTCCGACAGCGTGCAGAAAAGATATTACAGCAACTTTCTGACAGGAGCTAA

Protein sequence :
MKKDPTLQQAHDTMRFFRRGGSLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ
AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKILQQLSDRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sscA NP_456129.1 putative Type III secretion system chaperone protein Virulence SPI-2 Protein 5e-69 99
sscA NP_805070.1 type III secretion system chaperone protein Virulence SPI-2 Protein 5e-69 99
sscA NP_460364.1 secretion system chaperone Virulence SPI-2 Protein 2e-69 99
sscA AAC28880.1 putative secretion chaperone Virulence SPI-2 Protein 1e-69 99
sscA CAA12186.1 SscA Virulence SPI-2 Protein 1e-69 99
SC1420 YP_216407.1 secretion system chaperone protein SscA Virulence SPI-2 Protein 9e-69 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SN31241_24690 YP_008360385.1 Type III secretion low calcium response chaperone LcrH/SycD VFG0500 Protein 5e-70 99