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Name : SN31241_2460 (SN31241_2460) Accession : YP_008358165.1 Strain : Salmonella enterica USMARC-S3124.1 Genome accession: NC_021902 Putative virulence/resistance : Virulence Product : Outer membrane usher protein lpfC Function : - COG functional category : - COG ID : - EC number : - Position : 249417 - 251945 bp Length : 2529 bp Strand : + Note : long polar fimbrial outer membrane usher protein LpfC PRK15207; Outer membrane usher protein lpfC of Enterobacteriaceae UniRef RepID=LPFC_SALTY DNA sequence : ATGACATGGACGCATCTTCCTCTGGGCAATAAGACCTCGCGTTTCACGCAGTCTGCGCTTGCGCTGATGATAGCGGGTAC GCTCCCCGCGTATGCGGGAACATTTAACCCGCGCTTTCTGGAGGATGTGCCGGGTATTGATCAGCACGTTGACCTTTCAA TGTATGAATCCAATAAAGCTGAACACCTGCCAGGTAAATACCGCGTCTCGGTGGTGGTCAACGAAAAAAAAATGGAGTCT CGCACCCTGGAGTTTAAGGCAGCGACAGAGGCGCAGCGCGCAAAAATGGGTGAATCCCTGGTGCCGTGCTTAAGCCGCGT GCAGCTTGAAGATATGGGCGTGCGTATTGATAGCTTCCCGGCTCTGAAAATGGCCCCGCCTGAAGCCTGTGTTGCTTTTG ACGACATTATTCCCCAGGCCGCCAGCCATTTCGACTTTGCAGACCAGACCCTGATCATGAGCTTCCCGCAGGCTGCGATG AAGCAGACAGCGCGCGGTACGGTGCCAGAATCGCAGTGGGACGAAGGGGTGAATGCCCTGCTGGTGGATTATAACTTTTC CGGCAGCAACGCCAGCTATGACGCACACGACAGTGAAACCAGCTACAACAGCGACAGCTACTATCTGAATCTGCGCAGCG GTATGAACCTGGGGGCATGGCGGTTACGTAACTATAGCACCTGGACGCGAAACGACGGTAACAACACATGGGATAACATT GGCACATCTCTAAGCCGTGCCATTGTGCCGCTGAAATCACAGCTGACGTTGGGGGATACCTCCACCGCCGGTGATATTTT TGACAGCGTTCAGATGCGCGGTGTGCAGTTAACTTCCGACGAAGAGATGCTGCCTGACAGCCAGCGCGGGTTTGCGCCCG TCATCCGGGGTATTGCCAAAAGTAACGCCGAAGTTACCGTTGAGCAGAACAACTACGTTATTTACCGTACGTTTGTTCAG CCGGGTGCGTTTGAAATTAACGACCTGTATCCAACCTCAAACAGCGGCGACCTGACGGTCACCATTAAAGAATCGGACGG CAGTGAGCAGAAGTTCGTTCAGCCGTTCTCCTCGGTGGCGCTCCTCCAGCGTGAAGGCCATCTCAAATACAGCCTTTCCG CCGGGGAATACCGTGCCGGGAACTATAACAGCGCCGAGCCGAAATTCGGGCAGCTTGATGCCATGTACGGCCTGCCGTAT GGCTTTACCGTTTACGGTGGTGCGATCTTCTCTGACGACTATTACTCGCTGGCGGGAGGATTAGGTAAAAACTTCGGTTA TATCGGCGCGATCTCCATCGATGTAACCCAGGCAAAAAGCAAGCTGGCAAATGAGGAGAATTCGGAAGGTCAGTCTTATC GTTTCCTCTACTCCAAGAGCTTTAACAGCGGTACAGATTTCCGTCTGCTGGGTTACAAGTATTCGACCAGCGGCTATTAC ACCTTCCAGGAAGCGACGGATGTGCGCAGCGATGCGGACAGCTCTTATAGCCAGTACCACAAACGTAGTCAGATTCAGGG CAACGTGACGCAGCAACTGGGCGCCTGGGGCTCGGTCTATTTTAACGTCACGCAGCAGGACTACTGGAACGATGAAGGTA AACAGCGTTCGCTGAATGCCGGTTATAACGGCCGTATTGGCCGCGTGAACTACAGCGTTGCTTACACCTGGACGAAAAGC CCGGAGTGGGATGAGAGCGATCGTTTACTGTCATTCTCCATGTCGATTCCACTGGGACGCGTGTGGAGTAACTACCACCT CACGACCGATCAGCATGGCCGAACCAACCAGCAGTTAGGGGTGAGCGGCACCGCGCTGGAAGACCACAACCTGAACTATA GTGTGCAGGAAGGCTACGGCAGCAACGGCGTGGGTAACAGCGGCAGCGTGAACCTGGATTACCAGGGCGGCGTGGGTAGC GCCAGCCTGGGTTACAACTACAACCGTGACGGCCAGCAGGTGAACTACGGTTTGCGCGGCGGTGTGATAGCCCATAGCGA AGGTATCACTCTTTCTCAACCGCTGGGTGAATCCATGGCCATTATCTCCGCGCCGGGCGCGCGCGGCGCGCACGTGATCA ACAACGGTGGTGTGGAAGTGGACTGGATGGGTAATGCGGTCGTGCCTTACCTTACTCCGTACCGTGAAACGGAAGTCTCA CTGCGAAGCGACAGCCTGAACAACCAGGTTGACCTGGATACCGCCTCCGTCAACGTAGTGCCGACACGCGGCGCGATTGT TCGTGCCCGCTTCGATACCCGAGTGGGCTATCGCGTGCTGATGAATCTGACGCAGGCCAATGGCAAAGCGGTGCCGTTTG GTGCTACCGCCACGCTGCTGGATACCACAAAAGAGTTCAGCAGCATTGTGGGTGAAGACGGTCAGCTTTATATCAGCGGG ATGCCGGAGAAAGGTGCCCTTCAGGTGAACTGGGGTAAAGACCAGGCACAGCAATGCCGCGTGGCGTTTACGCTGCCGGA ACAACAGGATAATACCGGCGTGGTGATGGCGAATGCCGTCTGCCGGTAA Protein sequence : MTWTHLPLGNKTSRFTQSALALMIAGTLPAYAGTFNPRFLEDVPGIDQHVDLSMYESNKAEHLPGKYRVSVVVNEKKMES RTLEFKAATEAQRAKMGESLVPCLSRVQLEDMGVRIDSFPALKMAPPEACVAFDDIIPQAASHFDFADQTLIMSFPQAAM KQTARGTVPESQWDEGVNALLVDYNFSGSNASYDAHDSETSYNSDSYYLNLRSGMNLGAWRLRNYSTWTRNDGNNTWDNI GTSLSRAIVPLKSQLTLGDTSTAGDIFDSVQMRGVQLTSDEEMLPDSQRGFAPVIRGIAKSNAEVTVEQNNYVIYRTFVQ PGAFEINDLYPTSNSGDLTVTIKESDGSEQKFVQPFSSVALLQREGHLKYSLSAGEYRAGNYNSAEPKFGQLDAMYGLPY GFTVYGGAIFSDDYYSLAGGLGKNFGYIGAISIDVTQAKSKLANEENSEGQSYRFLYSKSFNSGTDFRLLGYKYSTSGYY TFQEATDVRSDADSSYSQYHKRSQIQGNVTQQLGAWGSVYFNVTQQDYWNDEGKQRSLNAGYNGRIGRVNYSVAYTWTKS PEWDESDRLLSFSMSIPLGRVWSNYHLTTDQHGRTNQQLGVSGTALEDHNLNYSVQEGYGSNGVGNSGSVNLDYQGGVGS ASLGYNYNRDGQQVNYGLRGGVIAHSEGITLSQPLGESMAIISAPGARGAHVINNGGVEVDWMGNAVVPYLTPYRETEVS LRSDSLNNQVDLDTASVNVVPTRGAIVRARFDTRVGYRVLMNLTQANGKAVPFGATATLLDTTKEFSSIVGEDGQLYISG MPEKGALQVNWGKDQAQQCRVAFTLPEQQDNTGVVMANAVCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 3e-165 | 44 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 5e-167 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SN31241_2460 | YP_008358165.1 | Outer membrane usher protein lpfC | VFG0454 | Protein | 0.0 | 99 |
| SN31241_2460 | YP_008358165.1 | Outer membrane usher protein lpfC | VFG0876 | Protein | 1e-167 | 45 |
| SN31241_2460 | YP_008358165.1 | Outer membrane usher protein lpfC | VFG1645 | Protein | 3e-167 | 41 |
| SN31241_2460 | YP_008358165.1 | Outer membrane usher protein lpfC | VFG0446 | Protein | 8e-154 | 41 |
| SN31241_2460 | YP_008358165.1 | Outer membrane usher protein lpfC | VFG0912 | Protein | 2e-166 | 41 |
