|
Name : SN31241_12980 (SN31241_12980) Accession : YP_008359215.1 Strain : Salmonella enterica USMARC-S3124.1 Genome accession: NC_021902 Putative virulence/resistance : Virulence Product : Outer-membrane fimbrial usher protein Function : - COG functional category : - COG ID : - EC number : - Position : 1334662 - 1337172 bp Length : 2511 bp Strand : + Note : pilin outer membrane usher protein SafC PRK15223; Outer-membrane fimbrial usher protein of Gammaproteobacteria UniRef RepID=B5BDS7_SALPK DNA sequence : ATGAAGTTCAAACATCCTGCCTTGCTACTGTTTATCGCGGGAGTGGTTCACTGCGCAAATGCGCACACTTACACATTCGA TGCATCAATGTTGGGCGATGCAGCGAAAGGGGTTGATATGTCGCTCTTTAACCAGGGGGTACAACAGCCAGGGACTTATC GAGTGGACGTAATGGTGGATGGTAAACGTGTCGACACCCGTGATGTGGTGTTCAAATTAGAAAAGGATGGGCAAGGAACG CCTTTTCTGGCTTCTTGTTTGACGGTCAGTCAGCTTTCACGCTACGGCGTAAAAACGGAAGATTACCCTCAGTTGTGGAA AGCAGCAAAGACCCCAGATGAGTGTGCGGATCTGAGCGCCATTCCACAGGCTAAAGCGGTACTGGATGTCAATAATCAGC AACTGCAACTGAGTATTCCTCAGGTGGCGTTGCGTACGAAATTTAAGGGGATCGCTCCAGAAGATCTTTGGGATGATGGT ATTCCGGCGTTTCTGATGAACTACAGTGCGAGGACAACGCAGACGGATTACAAAATGGATATGGTGGGGCGTGACAACTC TTCCTGGGTACAACTGCAACCGGGAATCAATATAGGTGTGTGGCGTGTCCGCAATGCGACCAGCTGGCAGCGGAGTAGTC AACTGTCGGGGAAGTGGCAGGCAGCATATACCTATGCTGAGCGTGGACTGTACTCACTAAAAAGTCGTCTGACTCTGGGG CAAAAGACTTCGCAGGGGGAGATATTTGATAGTGTGCCATTTACCGGTGTGATGTTGGCATCGGATGACAACATGGTGCC CTACAGTGAGCGGCAGTTTGCTCCGGTAGTGCGTGGGATTGCCCGCACGCAGGCTCGGGTGGAGGTCAAACAGAATGGTT ACACCATTTACAACACCACCGTGGCGCCCGGACCGTTTGCACTGCGGGATCTGTCGGTAACAGACAGTAGTGGTGATCTG CATGTCACCGTGTGGGAGGCCGATGGCAGTACACAAATGTTTGTGGTGCCGTATCAGACCCCGGCGATAGCACTGCACCA GGGATATTTGAAGTACAGCCTGTTGGCGGGCCGATACCGATCGTCAGACTCTGCAACGGATAAGGCGCAGATCGCGCAGG CTACGTTGATGTATGGTCTGCCGTGGAACCTCACTGCATACGGCGGTATACAGAGTGCAACGCACTATCAAGCTGCATCG CTTGGTTTGGGGGGATCTCTCGGGCGGTGGGGGAGTTTATCTGTCGATGGAAGCGACACACACAGTCAGCGTCAGGGGGA GGCGGTACAGCAAGGAGCCTCTTGGCGACTGCGTTACAGCAACCAGCTGACTGCGACGGGGACAAATTTTTTTCTGACGA GATGGCAGTATGCCTCGCAGGGCTATAACACCTTATCCGATGTGCTCGACAGTTATCGACATGATGGCAACCGTCTATGG TCGTGGCGAGATAATTTGCAGCCGAGCTCGCGTACCACCCTGATGTTGAGTCAGTCATGGGGGAGGCATTTGGGCAATCT GAGTTTAACCGGTTCCCGTACCGACTGGCGTAATCGCCTCGGTCATGATGACAGCTACGGACTGAGTTGGGGAACCTCTA TCGGAGGGGGCTCGCTGTCATTGAACTGGAATCAAAACAGAACGCTGTGGCGCAATGGCGCGCACCGTAAAGAGAACATA ACCAGCCTGTGGTTCAGTATGCCATTAAGCCGCTGGACGGGGAATAATGTAAGTGCTAGTTGGCAGATGACTTCACCATC ACACGGTGGTCAGACGCAACAAGTGGGGGTCAACGGAGAGGCATTCAGTCAGCAACTGGATTGGGAGGTGCGTCAGAGTT ACCGTGCCGATGCCCCGCCAGGTGGTGGTAATAACAGCGCATTGCACTTGGCATGGAATGGGGCTTACGGCCTGTTAGGT GGTGACTATAGCTACAGCCGGGCGATGCGCCAGATGGGAGTCAATATCGCGGGAGGTATAGTTATCCACCATCATGGTGT GACGCTGGGGCAACCTTTGCAAGGCTCAGTGGCGCTGGTTGAAGCGCCAGGGGCCTCGGGGGTGCCAGTTGGCGGCTGGC TTGGCGTTAAGACGGATTTTCGTGGCGACACTACAGTGGGCAACCTGAGCGTCTATCAGGAGAATACAGTCAGCCTCGAT CCGTCGCGACTACCGGATGACGCAGAGGTCACACAAACCGATGTGCGCGTGGTGCCAACCGAAGGGGCGGTGGTGGAAGC GAAGTTTCACACTCGCATCGGGGCCAGGGCACTGATGACGCTGAAACGGGAAGATGGTAGCGCCATTCCTTTCGGGGCGC AGGTTACAGTCAATGGGCAGGATGGCAGTGCTGCTCTGGTGGATACTGATAGCCAGGTTTATCTCACTGGTCTGGCGGAT AAGGGCGAACTGACGGTGAAATGGGGAGCACAGCAATGTCGGGTTAACTACCAGCTACCTGCCCACAAGGGAATCGCGGG CTTGTATCAAATGAGCGGTCTCTGCAGATAG Protein sequence : MKFKHPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVDGKRVDTRDVVFKLEKDGQGT PFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLSAIPQAKAVLDVNNQQLQLSIPQVALRTKFKGIAPEDLWDDG IPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGVWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDL HVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAS LGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHDGNRLW SWRDNLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRLGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGAHRKENI TSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLG GDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWLGVKTDFRGDTTVGNLSVYQENTVSLD PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQDGSAALVDTDSQVYLTGLAD KGELTVKWGAQQCRVNYQLPAHKGIAGLYQMSGLCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| safC | NP_454907.1 | outer-membrane fimbrial usher protein | Not tested | SPI-6 | Protein | 0.0 | 98 |
| afaC | AAD44022.2 | AfaC | Virulence | PAI-I AL862 | Protein | 0.0 | 50 |
| afaC | ADD91743.1 | putative AfaC-VIII usher protein | Not tested | PAI-I AL862 | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SN31241_12980 | YP_008359215.1 | Outer-membrane fimbrial usher protein | VFG0853 | Protein | 0.0 | 50 |
| SN31241_12980 | YP_008359215.1 | Outer-membrane fimbrial usher protein | VFG0944 | Protein | 0.0 | 50 |
| SN31241_12980 | YP_008359215.1 | Outer-membrane fimbrial usher protein | VFG0849 | Protein | 7e-178 | 46 |
| SN31241_12980 | YP_008359215.1 | Outer-membrane fimbrial usher protein | VFG0857 | Protein | 8e-174 | 46 |
| SN31241_12980 | YP_008359215.1 | Outer-membrane fimbrial usher protein | VFG0419 | Protein | 3e-167 | 44 |
