Gene Information

Name : SN31241_11910 (SN31241_11910)
Accession : YP_008359109.1
Strain : Salmonella enterica USMARC-S3124.1
Genome accession: NC_021902
Putative virulence/resistance : Virulence
Product : fimbrial chaperone yfcS
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1222726 - 1223499 bp
Length : 774 bp
Strand : +
Note : fimbrial chaperone protein StfD PRK15285; Uncharacterized fimbrial chaperone yfcS of Bacteria UniRef RepID=YFCS_ECOLI

DNA sequence : 
TTGATTCAGGAAACCGCATTCATGATGCCATTAAAACGTTATAACCTGGCCGCTGTTTTGCTGCTTTTGCTGGGCGGCTA
CGGTAGCGCTCAAGCCGCCATCGCGCCCGATCGCACCCGCCTGGTATTTCGCGGCGAAGATAAATCGATAAGCGTCGATC
TGAAAAACGCCAACAGCAAACTGCCCTATCTGGCGCAGTCCTGGGTGGAAGATGAGAAGGGCGTCAAAATCACCTCGCCT
TTAATCGTCGTCCCACCGGTCCAGCGCATTGAGCCGTCGGCAATCGGACAGGTCAAAATTCAGGGGATGCCGGCGCTGGC
GTCGCTCCCTAAGGATCGGGAAACCCTTTTTTATTACAACGTGCGCGAAATTCCGCCGCAAAGCGACAAGCCCAATACGC
TGCAAATCGCCCTGCAAACGCGCATCAAAGTTTTTTACCGCCCGCAGGCGCTATCGAAAATCGATATGCAGCATCCCTGG
CAATACAAGATCACCCTTCAGCGTCAGGGCAATGGCTATCAGGTGAGCAATCCGACCGGTTACTACGTGGTGTTAAGCAA
CGCCAGCAACCGCATGGACGGCACACCAGCCAGAGGCTTTAGCCCTTTAGTGATTGCACCAAAAAGCAACGTGACGCTGG
GAGGGGACGCCAGTGAATTAGGTCACTCGCCTGTGCTGACTTACGTCAACGATTATGGCGCGCGGTTACCGCTGATTTTT
AACTGTACTGACAACAGTTGTGCGGTAGATGAAGCAAAAAGCAGAAAGTCGTAA

Protein sequence : 
MIQETAFMMPLKRYNLAAVLLLLLGGYGSAQAAIAPDRTRLVFRGEDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSP
LIVVPPVQRIEPSAIGQVKIQGMPALASLPKDRETLFYYNVREIPPQSDKPNTLQIALQTRIKVFYRPQALSKIDMQHPW
QYKITLQRQGNGYQVSNPTGYYVVLSNASNRMDGTPARGFSPLVIAPKSNVTLGGDASELGHSPVLTYVNDYGARLPLIF
NCTDNSCAVDEAKSRKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 1e-47 44
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 3e-47 44
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 3e-47 44
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 2e-47 44
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 2e-47 44
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 2e-47 44
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 3e-48 44
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 1e-42 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SN31241_11910 YP_008359109.1 fimbrial chaperone yfcS VFG1547 Protein 7e-48 44
SN31241_11910 YP_008359109.1 fimbrial chaperone yfcS VFG0896 Protein 1e-47 44
SN31241_11910 YP_008359109.1 fimbrial chaperone yfcS VFG0885 Protein 6e-43 43