|
Name : SN31241_11640 (SN31241_11640) Accession : YP_008359082.1 Strain : Salmonella enterica USMARC-S3124.1 Genome accession: NC_021902 Putative virulence/resistance : Virulence Product : Outer membrane usher protein FimD Function : - COG functional category : - COG ID : - EC number : - Position : 1193847 - 1196399 bp Length : 2553 bp Strand : - Note : fimbrial outer membrane usher protein StiC PRK15298; Outer membrane usher protein FimD of Salmonella enterica UniRef RepID=B4SUA0_SALNS DNA sequence : GTGCCGATGCGCAAAAGGCAACACCGGGTATTTTATTTATCGCGCTGCGCTGTGTGTATCGCGCTGGGCAGCACGTTCGC ACACGTTGCATGGGCGCGCGACTATTTCAATCCGGCATTTATTGAAAACCATGGGCAGGCGAGTCGCACAAGCGTCGATC TGTCGACATTTGATAACGACAAAAGCCAGCTGCCAGGCACCTATTACGTCACTATCAATATCAATAAAACAGAAATCGGC GCGCGAAACGTTGATTTTCAACTCACGACGCTCAGTGACGGTCAACAGGCATTACAGGGCTGTTTACGGCTCCAGGAACT AAAAGATAACGGCGTCAAAACCGACCTTTTTCCAACGCTGGAGAGTGAAAAAGGCTGCGTCGATCTCAGCGTTATCCCCG GCGCCAGCCAGCGGTTTGATTTTCAGCAACAGGCATTATCAGTAAGCATCCCGCAACTCTACATCGCCAACAACGCACGC GGCTACGTACCGCCGGAAAAGTGGCAGGAGGGGATTACCGCGCTGATGCTGAACTACAGCTTCAGCGGCTATAAAGAGTA CGGTTCCAGTGAGGATTCCGACGATGCGGAATCGAAGTATCTCGCTCTCCAGCCGGGTTTTAACCTCGGGCCGTGGCGTT TTCGCAACTACAGTAACTGGAGTTCAAATAACGGCGAGAGCGGTAGCTGGAACAGCGTTTATAACTATTTACAGCGCGAC ATTATCGCGCTGAAAAGCCAGTTCACCGCCGGAGACAGCAATACGCCATCCGACGTGTTCGACAGCGTACCTTTTCGCGG CCTCCAGCTCACCTCTGACGATCAAATGCAGCCCAACAGCCAGCGTGGTTACGCCCCGACGATTCGCGGCATCGCCCGCT CAAACGCGCAGGTTATCGTGCGGCAAAACGGCTATATCGCCTATCAGACCGCCGTTTCGCCGGGCGAATTTGAAATCAAC GATATGTTTCCCACCGGCAGCAACGGCGACTATGACGTGACGGTAAAAGAAACCGACGGCAGCGAACAGCACTTTATCGT GCCCTACTCTTCGCTGCCGATTCTGCAGCGCACCGGACGGGCAAAATACAGCGTGACCGTGGGTAAATATCGCGATTATA ACAACCACACGCTGGACGACTTCGGCCAGGCGACCTTGCTGTACGGCCTGCCGTGGGGCATCACCCTGTACGGCGGCAGC CAGATTGCCGGCGATAAATACCAGTCCGTCGCCTTCGGCGTCGGGCAAAATATGCAGATGCTGGGGGCCATTTCCCTGGA CGGCATCTGGTCGCACGCCAAATTTGACGATGGCCGCAAAGAAATCGGGCAATCCTGGCGCGTCCGCTACAGCAAGGGCG TCGTCAGTACGGGCACCACGTTTTCGCTGGCCGGCTATCGTTACGCCAGCGAAAACTACAATTCGCTGAGCGAGGTGATC AACCCGGACGACGATTTTTATGATAACTACGGCAAGCGCCATAATCGTTTCGAAGCTTCGGTCAACCAGCAAATTAGCAA TACGCTCGGTTCCTTAACGCTAAGTTGGGTCAAAGAAGATTACTGGCACAGCGCGCAGCAGATGGAATCCCTGAGCGCCA GCTACAACAATAGCTGGGGTCCGGTGAGCTATACGCTGAGCTACAGCTATAACAAAAACACCTACCAGTACCGTTCGGGC AATGACGATGATGACAACGACGACGATCGTTATAACCAGAACGATCGGCTGTTCACGCTGTCGCTGCACGTTCCGTTTAC GGTGTTCGATTCCAGGCTATACGCCAGCTATATGCTGAACACGCGTAAGCACGATGCCACGGTGAACAGCACCACCCTTA GCGGCACCGCGCTGCGTGACAGAAACCTGAACTGGTCGTTACAGCAAAGCCACAGCACACAAGACGGTGATTCCGGCGGG GTAAACGCCAGCTATAAAGGCACTTATGCCAACCTCAACGCCGGTTACAATCAGTCGCCAGATAGCCAACAGGTCAGCTA CGGCATCAGCGGCGGCATTCTGGCGCACGAAAACGGTATTACCCTGAGCCAGCCGATTACCGGCGCGGCGATTTTAATTA AAGCGCCCGGCGCCAGCGGCGTTTCGGTTGAAAACCAGACCGGCGTCGCCACCGACTTCCGGGGTTATACGGTGATCCCC AACGTCACGCCGTATTATCGCTACGATATCTCGCTCGACAGCAGCACGTTTGCTGACAACGTGGATATTCCGCTCAACAA CCAGACCGTCTACCCGACGCGTAATGCGGTGGTGCGCGCGGCGTATGACACGCATAAGGGCTATCGCGTGTTGTTAACGC TGACGCGCAGCAATGGCGAGCCCGTGCCCTTTGGCGCGACGGCAAGCGTCGATGGGCAGGATGCGAACCTGGCCAGTATC GTCGGCGATAAAGGCCAGGTCTTCCTCAGCGGCCTGCCGGAAGAGGGCCTGCTGCTGGTGAACTGGGGAAGCGCCTCTTG CCGCACGGATTACCGCCTGGATATCAGCAAAAATATGAACGGCATAGTGATGGCGAACGCCGTCTGCCAGTGA Protein sequence : MPMRKRQHRVFYLSRCAVCIALGSTFAHVAWARDYFNPAFIENHGQASRTSVDLSTFDNDKSQLPGTYYVTININKTEIG ARNVDFQLTTLSDGQQALQGCLRLQELKDNGVKTDLFPTLESEKGCVDLSVIPGASQRFDFQQQALSVSIPQLYIANNAR GYVPPEKWQEGITALMLNYSFSGYKEYGSSEDSDDAESKYLALQPGFNLGPWRFRNYSNWSSNNGESGSWNSVYNYLQRD IIALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQVIVRQNGYIAYQTAVSPGEFEIN DMFPTGSNGDYDVTVKETDGSEQHFIVPYSSLPILQRTGRAKYSVTVGKYRDYNNHTLDDFGQATLLYGLPWGITLYGGS QIAGDKYQSVAFGVGQNMQMLGAISLDGIWSHAKFDDGRKEIGQSWRVRYSKGVVSTGTTFSLAGYRYASENYNSLSEVI NPDDDFYDNYGKRHNRFEASVNQQISNTLGSLTLSWVKEDYWHSAQQMESLSASYNNSWGPVSYTLSYSYNKNTYQYRSG NDDDDNDDDRYNQNDRLFTLSLHVPFTVFDSRLYASYMLNTRKHDATVNSTTLSGTALRDRNLNWSLQQSHSTQDGDSGG VNASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQPITGAAILIKAPGASGVSVENQTGVATDFRGYTVIP NVTPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGYRVLLTLTRSNGEPVPFGATASVDGQDANLASI VGDKGQVFLSGLPEEGLLLVNWGSASCRTDYRLDISKNMNGIVMANAVCQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 2e-135 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SN31241_11640 | YP_008359082.1 | Outer membrane usher protein FimD | VFG0454 | Protein | 1e-139 | 42 |
| SN31241_11640 | YP_008359082.1 | Outer membrane usher protein FimD | VFG0912 | Protein | 5e-128 | 41 |
