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Name : SN31241_11290 (SN31241_11290) Accession : YP_008359047.1 Strain : Salmonella enterica USMARC-S3124.1 Genome accession: NC_021902 Putative virulence/resistance : Virulence Product : transport protein Function : - COG functional category : - COG ID : - EC number : - Position : 1154716 - 1156101 bp Length : 1386 bp Strand : - Note : Protein transport protein hofB of Enterobacteriaceae UniRef RepID=HOFB_ECOLI; overlaps CDS with the same product name DNA sequence : ATGAAAGACGCTCAGCTCAACACCTTGTGTCAACGTCATCAGGCTGTACTGATCAATAGCGCCAGCAACAGTATCACTGT TGCGGTGGTCGACGCGCCCTCTCATGCGTTACTGGACGCTCTGCATTTCGCCACGCAAAAACAGATTGATATTGTGTGCT GGACTCGCCAGCAAATGGAAAATCATCGGCATAAGCCGGATCAGGCACCCTCGGCAAACGCCGCGAAAGGCGGAGAAACC GCAGCCCAGCTTCTCAATCAGACATTACGCTCGGCGATGGCGAAACGCGCCTCTGATATCCATCTCGAACCCGGCGCCAG CCGCTACCGAATAAGACTCCGCATCGATGGCGTTCTTCATATTCTGCAGGACATCGCCAAAGAGACGGGGCTTGCACTGA CGGCCAGATTGAAAGTCCTGGGAAATTTGGACATCGCTGAACATCGGCTGCCGCAGGACGGGCAATTTACCGTTGACCTG GCGGGAGACAGCATCTCTTTTCGTATCGCCACGCTTCCCTGTAAAGAAGGCGAAAAAGTCGTCTTACGGTTGTTGCATCA GGTTGAACAAACGCTGGATCTGGACACGCTGGGCATGTACGGGGCACAACTTACCGCTTTTAGACAAGCCCTACAGCAAC CTCAGGGGCTGGTACTGGTGACTGGCCCCACCGGTAGCGGAAAAACGGTCACGCTATACAGCGCGCTACAAACCCGGAAT ACGCCGGGTATCAACCTCTGTAGCGTTGAGGATCCGATAGAAATTCCACTGGATGGGATTAACCAGACGCAGATCCATCC CCGCGCCGGGCTCACCTTTCAAAATGTGCTGCGCGCGCTTTTACGCCAGGACCCTGACATCATCATGGTAGGTGAAATTC GTGACGGCGACACCGCAGAAATCGCCATTAAGGCGGCACAAACGGGCCATCTGGTACTTTCAACGCTCCATACGAACTCC ACCAGTGAAACCCTGATACGTTTGCAGCAAATGGGCGTAGCACGCTGGATGATCTCATCGGCGCTTACGCTGGTGGTAGC GCAACGCCTGGTAAGGAAGCTTTGCCCGCACTGCAAACAGCGTCTGAGCGATCCCGTGGTGCTATCGCCCAATCTTTGGC CCAGCGCGCTACCGCGCTGGCAGGCAAGCGGCTGTCAGCATTGCTACCACGGCTTTTATGGCCGAACCGCGTTATTCGAA GTGTTAACCGTTACCCCGGCATTACGTCAGTTAATTGCGAGCGGCGCATCGGCGCAAGTACTGGAAGCCCACCTCCAACA GACCGGTACAGGGACGCTTTTTGAAAATGGCTGTCGCGCCGTTGAACAAGGCATGACGTCCTTTGAAGAGATACTGCGCG TTCTGGGAATGCCCCATGAGCGTTAA Protein sequence : MKDAQLNTLCQRHQAVLINSASNSITVAVVDAPSHALLDALHFATQKQIDIVCWTRQQMENHRHKPDQAPSANAAKGGET AAQLLNQTLRSAMAKRASDIHLEPGASRYRIRLRIDGVLHILQDIAKETGLALTARLKVLGNLDIAEHRLPQDGQFTVDL AGDSISFRIATLPCKEGEKVVLRLLHQVEQTLDLDTLGMYGAQLTAFRQALQQPQGLVLVTGPTGSGKTVTLYSALQTRN TPGINLCSVEDPIEIPLDGINQTQIHPRAGLTFQNVLRALLRQDPDIIMVGEIRDGDTAEIAIKAAQTGHLVLSTLHTNS TSETLIRLQQMGVARWMISSALTLVVAQRLVRKLCPHCKQRLSDPVVLSPNLWPSALPRWQASGCQHCYHGFYGRTALFE VLTVTPALRQLIASGASAQVLEAHLQQTGTGTLFENGCRAVEQGMTSFEEILRVLGMPHER |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-69 | 46 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 9e-70 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SN31241_11290 | YP_008359047.1 | transport protein | VFG2048 | Protein | 2e-71 | 47 |
| SN31241_11290 | YP_008359047.1 | transport protein | VFG2426 | Protein | 9e-70 | 45 |
| SN31241_11290 | YP_008359047.1 | transport protein | VFG0182 | Protein | 5e-73 | 44 |
| SN31241_11290 | YP_008359047.1 | transport protein | VFG1876 | Protein | 1e-74 | 44 |
| SN31241_11290 | YP_008359047.1 | transport protein | VFG0112 | Protein | 3e-77 | 44 |
| SN31241_11290 | YP_008359047.1 | transport protein | VFG0233 | Protein | 1e-68 | 43 |
