Gene Information

Name : lysS (CTRC852_04380)
Accession : YP_008345789.1
Strain : Chlamydia trachomatis RC-F(s)/852
Genome accession: NC_021888
Putative virulence/resistance : Virulence
Product : lysyl-tRNA synthetase
Function : -
COG functional category : -
COG ID : -
EC number : 6.1.1.6
Position : 957590 - 959170 bp
Length : 1581 bp
Strand : +
Note : COG1190 Lysyl-tRNA synthetase (class II)

DNA sequence :
ATGTCTGTAGAAGTTGAATACTTGCAACACGAAGATTATTTGTATAGAACAAGCAAGCTAAAGGAAATCAGAGATTTGGG
CATAAATCCTTACCCTTATCAATACACTGATTGTCTTGAAGTACAGGAAATTCGTAATCAGTTTGTAGATAACGAATTAG
GAGATAGCGAAGCGGCTTTTCGTAAAGAGACACCTAAGGTGCGTTTTGCCGGACGACTTGTTCTTTTCCGTTCTATGGGG
AAAAATTCTTTTGGGCAGATCCTCGATAATGATGCAAAGATTCAAGTGATGTTTAATCGAGATTTTTCTGCAGTGGCAGG
GTTAGCCGCGGATGCTGGGATTTCTCCGATTAAATTTATTGAGAAGAAACTTGATCTAGGAGACATCTTGGGTCTCGAAG
GGTATCTTTTCTTTACTCACTCAGGAGAATTAACGGTTCTCGTTGAAACGGTAACGTTGTTATGTAAATCCTTAATTTCT
TTGCCTGATAAGCATGCAGGATTAGCAGATAAAGAAATTCGCTATCGCAAACGTTGGGCAGATCTGATTTCCTCAGAGGA
TGTGCGTAAGACTTTCTTAACAAGAAGCCGGATTCTTAAGTTGATTCGTGAGTACATGGATCAGCAGAGCTTTTTAGAGG
TGGAAACTCCTATCCTGCAAACCATCTACGGAGGAGCAGAAGCAACTCCTTTTGTTACCACGCTGCAAGCGCTACATGCA
GAAATGTTCCTAAGAATTTCTCTAGAGATTGCTTTGAAAAAACTCCTTGTTGGAGGAATGTCCCGAGTTTATGAAATCGG
CAAAGTTTTCCGTAACGAAGGAATCGATAGAACGCATAATCCAGAGTTTACCATGATAGAGGCTTATGCGGCTTATTGGG
ATTACAATGATGTAATGAAATGTGTGGAAAACCTTATTGAGTATATCGTACGTGCTTTGAATAACGGGGAAACTCAGGTT
CAGTATTCACATTTAAAATCAGGACCTCAGGTTGTTGATTTTAAAGCTCCATGGATCCGTATGACGATGAAAGAAAGTAT
CTCTGTCTATGGCGGCGTCGATGTAGACTTACATGCAGATCATGAATTACGTAAAATTTTAGAAACACAAACATCTCTTC
CAGAGAAAACGTATGTTCATGCCTCACGAGGAGAGCTGATCGCTTTGCTATTTGATGAGCTGGTTTGTGATAAGCTCATC
GCTCCGCATCACATTACAGATCATCCATTAGAAACAACGCCACTTTGTAAAACATTGCGTTCTGGGGATGAAACTCTGGT
AGAACGATTTGAGAGTTTTTGTTTAGGAAAAGAGTTGTGTAATGCTTATTCGGAACTCAATGATCCTTTACAACAACGAA
AATTGTTGGAAGAGCAAATGCGTAAAAAGGCTTTAAATCCTGACAGCGAATACCATCCTATAGATGAAGAATTTCTAGAA
GCTCTTTGCCAAGGAATGCCTCCTGCAGGAGGATTTGGAATAGGTATCGATCGATTGGTTATGATGTTGACAGACGCCGC
ATCCATTCGGGATGTCCTGTTTTTCCCTGTTATGCGGCGTATAGAAGCAAAAAAAGATTAA

Protein sequence :
MSVEVEYLQHEDYLYRTSKLKEIRDLGINPYPYQYTDCLEVQEIRNQFVDNELGDSEAAFRKETPKVRFAGRLVLFRSMG
KNSFGQILDNDAKIQVMFNRDFSAVAGLAADAGISPIKFIEKKLDLGDILGLEGYLFFTHSGELTVLVETVTLLCKSLIS
LPDKHAGLADKEIRYRKRWADLISSEDVRKTFLTRSRILKLIREYMDQQSFLEVETPILQTIYGGAEATPFVTTLQALHA
EMFLRISLEIALKKLLVGGMSRVYEIGKVFRNEGIDRTHNPEFTMIEAYAAYWDYNDVMKCVENLIEYIVRALNNGETQV
QYSHLKSGPQVVDFKAPWIRMTMKESISVYGGVDVDLHADHELRKILETQTSLPEKTYVHASRGELIALLFDELVCDKLI
APHHITDHPLETTPLCKTLRSGDETLVERFESFCLGKELCNAYSELNDPLQQRKLLEEQMRKKALNPDSEYHPIDEEFLE
ALCQGMPPAGGFGIGIDRLVMMLTDAASIRDVLFFPVMRRIEAKKD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 1e-69 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lysS YP_008345789.1 lysyl-tRNA synthetase VFG1668 Protein 9e-70 41