Gene Information

Name : N220_13970 (N220_13970)
Accession : YP_008340179.1
Strain : Mannheimia haemolytica USMARC_2286
Genome accession: NC_021883
Putative virulence/resistance : Virulence
Product : ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2656592 - 2657239 bp
Length : 648 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGATTAGTATTAGAAATGTAAGTAAGCAATATCGAACTAATAACGGTTGGAAAACCATATTAAAAGATATAAATTTTGA
GCTGAAAAAAGGCGAAAAAGTGGGGATTTTAGGGCGCAATGGTGCAGGAAAATCAACCTTAATCCGTTTAATGAGCGGAG
TAGAACCTCCAACAACAGGTACGATTGAACGTCAAATGTCGATTTCTTGGCCACTGGCATTTAGTGGTGCATTCCAGGGT
AGTTTGACCGGAATGGATAATCTTCGTTTCGTCAGCCGAATTTATGATGCTGATTTTGACTATGTAAAATCTTTCACCGA
AGAATTTTCAGAACTCGGTGAATATTTATATGAACCGGTAAAAAGCTATTCTTCTGGTATGAAGGCCCGTTTAGCCTTTG
CATTATCGCTTTCTATTGAATTTGATTGTTACTTAATTGATGAAGTGATTGCAGTAGGCGATGCTCGATTCGCTGCCAAA
TGTAAGCACGAGCTTTTTGAAAAACGGAAAGACCGTTCATTGATTTTAGTTTCTCATAGCCCAGCCTCAATTAAAGAATA
TTGCGATTCTGCAATGGTTTTAGAAGAGGGTATCATGCATACTTTTGATTCTATAGATAACGCTTATAATTTCTACAATA
AAACATAA

Protein sequence : 
MISIRNVSKQYRTNNGWKTILKDINFELKKGEKVGILGRNGAGKSTLIRLMSGVEPPTTGTIERQMSISWPLAFSGAFQG
SLTGMDNLRFVSRIYDADFDYVKSFTEEFSELGEYLYEPVKSYSSGMKARLAFALSLSIEFDCYLIDEVIAVGDARFAAK
CKHELFEKRKDRSLILVSHSPASIKEYCDSAMVLEEGIMHTFDSIDNAYNFYNKT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 1e-81 77
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 7e-46 47
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 9e-47 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
N220_13970 YP_008340179.1 ATP-binding protein VFG0696 Protein 2e-85 80
N220_13970 YP_008340179.1 ATP-binding protein VFG0258 Protein 5e-82 77
N220_13970 YP_008340179.1 ATP-binding protein VFG2563 Protein 2e-60 57
N220_13970 YP_008340179.1 ATP-binding protein VFG1449 Protein 2e-46 47