Gene Information

Name : N220_13965 (N220_13965)
Accession : YP_008340178.1
Strain : Mannheimia haemolytica USMARC_2286
Genome accession: NC_021883
Putative virulence/resistance : Virulence
Product : sugar ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2655798 - 2656595 bp
Length : 798 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGCGATATGGTGATAATACAACCTTTAAACGTTCCTGTGTGATTCAAAAACGGGTGATTCACGCCCTTTTAATGAGGGA
ATTAATTACTCGTTATGGGCGTAAAAATATTGGCTTCTTATGGCTTTTTATCGAACCATTATTGTTAACGTTAGTGATTA
CTGTTGCTTGGAAATATATAAAAGCAGATAAGTTTTCAACTTTAAATATTATCGCTTTTATGATTACAGGCTACCCTATC
GCAATGATGTGGAGAAATGCCTCTAATAGAGCTCAAGGAGCAATATCAGCAAACTTAAGTTTGCTTTACCACAGAAATGT
GAGAGTGCTAGATACGATATTTACTCGAGTTTTATTAGAAGTTACTGGCGCATCTATCGCCCAAATTCTCTTAATGACTA
TATTTATCGCTATTGGTTGGATAGAAATGCCTAACGATATTTTCTATATGCTCTGTGCTTGGATATTAATGGCATTTTTT
GCCTTAGGTTTAGGTTTAATTATCTGTACTTTAGCACATTATATTGAACCTTTTGGTAAGATTTGGGGAACATTCAGCTT
CTTTCTACTTCCTCTTTCTGGTGCATTCTTCTTTGTCCATAATTTACCGCTAACTGCTCAAAATATTGCCTTATGGTTTC
CAATGATTCATGGTACAGAAATGTTTAGACATGGTTATTTTGGTGAAACGGTAATTACCTATGAGAGCATTAGTTATCTT
ATAGTAAGTGATATTATTCTTCTATTTATAGGACTGCTTTGTGTGAGAAGTTTTAGTAAAGGGATAGAACCAAGATGA

Protein sequence : 
MRYGDNTTFKRSCVIQKRVIHALLMRELITRYGRKNIGFLWLFIEPLLLTLVITVAWKYIKADKFSTLNIIAFMITGYPI
AMMWRNASNRAQGAISANLSLLYHRNVRVLDTIFTRVLLEVTGASIAQILLMTIFIAIGWIEMPNDIFYMLCAWILMAFF
ALGLGLIICTLAHYIEPFGKIWGTFSFFLLPLSGAFFFVHNLPLTAQNIALWFPMIHGTEMFRHGYFGETVITYESISYL
IVSDIILLFIGLLCVRSFSKGIEPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrC NP_273137.1 capsule polysaccharide export inner-membrane protein Not tested IHT-A Protein 2e-83 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
N220_13965 YP_008340178.1 sugar ABC transporter permease VFG0685 Protein 8e-93 74
N220_13965 YP_008340178.1 sugar ABC transporter permease VFG0697 Protein 8e-93 74
N220_13965 YP_008340178.1 sugar ABC transporter permease VFG0257 Protein 7e-84 66
N220_13965 YP_008340178.1 sugar ABC transporter permease VFG2564 Protein 1e-51 44