Gene Information

Name : N220_13960 (N220_13960)
Accession : YP_008340177.1
Strain : Mannheimia haemolytica USMARC_2286
Genome accession: NC_021883
Putative virulence/resistance : Virulence
Product : capsule polysaccharide transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2654695 - 2655798 bp
Length : 1104 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGTCAAAGAAGAAAAAACATTTTTTAGCCAACCCTTTGTTGTGGCTAACTGTAATTATTCCAACTGCTTGTTCTGGAAT
TTATTATTCCTTATTTGCCTCTGATATTTATGTTTCAGAATCTAGCTTTGTGGTTCGTTCGCCCAATAATCAATCGAGCT
TAACAGGCGTTGGTGCTTTATTGCAAAACTCCGGTTTCGCCCGTTCTCAAGATGATACCTATTCAGTTCAGGAATATATG
CGTTCCCGTACCGCATTAGAACAACTTGAAGCAGAAATTCCGGTAAAGCGTTTTTATAGTGAGCAAGGTGATTTACTAAG
CAAATTTAACGGTTTAGGATTTAACGATACCCAAGAAGCATTTTATCGTTATTTTAAAGAACGTCTGAATATTGATGTCG
ATTCTATTTCAGGTATTGCAACGCTACGCGTTCGTGCTTTTAATGCAGAAGAAGGACAAAAAATTAACGAGAATTTATTA
CAGCAAGGGGAAACATTAATTAACCGCCTTAATGAAAGAGCAAGACAAGATACGGTTGAGTTTGCAGAAGAGCGTGTAAA
AGAGGCCGAAAAAGACGTCAATAATACTGCGTTAGCATTAAGCCAATATCGAACTAAAAATAAAATTTATGATTTACCGG
CACAATCCAGCGTTCAGCTCTCATTAATTTCTACCTTAAAAAGTGAATTAATTCGGGTAGAAACACAATTAGCACAATTG
AAGTCAATTACGCCGGATAATCCTCAGGTAGCCGCATTACAAATGCGTCAAAAAAGTTTGAAAAAAGAAATTGATGATCA
GTCCAAACAACTTGCAGGAGGTAATACTTCTGTAGCAACGCAAACTGCTGAATATCAACGTTTGGTTCTTGCTAACGAAT
TAGCTCAGCAACAACTTGCAGCAGCAATGACTTCATTACAAAATACACGAGGTGAAGCTGATCGCCAACAACTTTATTTA
GAGGTAATTGGTAGGCCAAGCAAACCAGATTGGGCATTAGAACCCTACAGAATTTATAATATTATATCAACTTTTTTTAT
CGGCTTAATTCTATTTGGAGTATTAAGTTTGTTACTAGCAAGTATTAGAGAGCATAAAAACTAA

Protein sequence : 
MSKKKKHFLANPLLWLTVIIPTACSGIYYSLFASDIYVSESSFVVRSPNNQSSLTGVGALLQNSGFARSQDDTYSVQEYM
RSRTALEQLEAEIPVKRFYSEQGDLLSKFNGLGFNDTQEAFYRYFKERLNIDVDSISGIATLRVRAFNAEEGQKINENLL
QQGETLINRLNERARQDTVEFAEERVKEAEKDVNNTALALSQYRTKNKIYDLPAQSSVQLSLISTLKSELIRVETQLAQL
KSITPDNPQVAALQMRQKSLKKEIDDQSKQLAGGNTSVATQTAEYQRLVLANELAQQQLAAAMTSLQNTRGEADRQQLYL
EVIGRPSKPDWALEPYRIYNIISTFFIGLILFGVLSLLLASIREHKN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrB NP_273136.1 capsule polysaccharide export inner-membrane protein Not tested IHT-A Protein 1e-86 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
N220_13960 YP_008340177.1 capsule polysaccharide transporter VFG0698 Protein 9e-117 81
N220_13960 YP_008340177.1 capsule polysaccharide transporter VFG0686 Protein 9e-117 81
N220_13960 YP_008340177.1 capsule polysaccharide transporter VFG0256 Protein 4e-87 57