Gene Information

Name : N220_13920 (N220_13920)
Accession : YP_008340169.1
Strain : Mannheimia haemolytica USMARC_2286
Genome accession: NC_021883
Putative virulence/resistance : Virulence
Product : capsule polysaccharide transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2643588 - 2645678 bp
Length : 2091 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGCTTAGCTATTTAGTGTTTTTTAGTAAAATTATAAAAATCCCTAATTTAAAAGGTTTTTTACCTCATTGTGAAATTAG
GCGAAGACCTCTTGTGGGAAAAACCTTTATTGCTCAAAAAAGACCGAACCAAATCATCGGCTGGGGGCTTCGTCCTTCAG
CGGTGGGATCAAGAGCTTATGCACAAAAACATCAACTTCCCTATATTGCATTAGAAGACGGCTTTTTACGCTCACTAGGG
CTGGGTGTAAAAGGCTATCCGCCATTTTCTTTAGTTTATGATGATATAGGTATTTATTACGATACCACCTGTCCTTCTCG
TTTAGAAAAGTTATTGCTTGAAAAACCTTTACAGGATCAAGAGCAAATCAAGCTTGCAGAGAGAGCATTATCTCAAATCT
TAACTTACGGACTTTCTAAATATAATCACGCACTAGATTTTAGTGAAATCCCCTCTGCCAAAGAAAAAATCGTGTTAGTT
ATTGACCAAACCTTTGGTGATATGGCGGTGAAATATGGTCAAGCGAGTGAAGTGGATTTCAATAAAATGTTGGAAACGGC
AATCAGTGAGAATCCAGAGGCTCAAATTTGGGTAAAAACTCACCCCGATGTATTAAGTGGCAAGAAGAAAGGCTATTTGA
CCGATTTACCTCAATATACTGATAGGGTCAGAATTATTACTGAAGATGTGAATCCGGCAAGTTTGATTAAATTGTGTGAG
AAAGTCTATTGCGTAACTTCGCAAATGGGGTTTGAGGCATTATTATTAGGTAAAAAAGTGGTTACCTTTGGTGTACCGTG
GTTTGCCGGTTGGGGGGTAACAGATGATCGTAACGAAGCGGTTCAACTATTAGTTCAACAAAATAGACGGAAAGATCGTT
CATTACTGCAACTTTTTTATGCTGCGTATTTTGATTACAGCCGTTATATTAATCCGAATACCGGTGAGAAAGGCTCTATT
TTTGATGTCATCGATTATCTATATAAAGCCAAAAGATTAAATCAGCGCTTAAGTGGGAATCTATACTGTATTGGTATGTC
GCTATGGAAACAGGCGGTAATTAAGCCGTTTTTTAATTTGCCACAATGTCGATTACATTTTGTTCGTTCGCTAAATTCTT
TAAAAAAACGACCGCTTGCAGATAATGCAAAAATTTTAGTTTGGAGCAATGGCAAAGCGGATGTCTTGCAATTTGCACAG
CAGAATAATATTCCATTGTTAAGAATGGAAGATGGATTCATTCGCTCTGTCGGACTAGGCGCTAATTTAGTTGCACCGCT
TTCTTTAGTAGTCGATGATTTAGGCATTTATTTTAATGCAGAGAACACTTCACGATTAGAACAAATTTTATTGAGTGCAG
AGCATTTTTCTGAAACTGATTTGTCTTATGCTGAAACATTAAGGCAGAAATTGGTGGCTAGCCATATTGGAAAATATAAT
GTGGGCGGTGGCGATGTAAAATTTAATGCTCAAGGTAAAAAAATAATTCTTGTACCGGGGCAGGTAGAAGATGACGCTTC
GATCAAATCAGGTTCTCCACAAATTAAAAGAAATCTGGATTTACTGAAAAAAGTGAGGGAATTAAACCCTAGTGCCTATA
TTATTTATAAGCCTCACCCTGATGTGGTAAGTGGTAATCGAGTCGGTCAGATTCCTACGGCAGAAACACGCAGGTTTGCG
GATCAGATGGTGGATAATGCCAATATTTTAGATTGTATTTTAATTGCAGATGAAGTGCATACAATGACATCTTTAGCCGG
TTTCGAAGCATTATTAAGAGGTAAAAAAGTGCATTGCTACGGATTACCTTTTTATGCTGGTTGGGGATTGACGGAAGATA
GATTGAAGTCGGCACGCAGAGGTAAATCTTTGACATTATCTCAGTTAATTGCCGCAACATTGATATATTACCCTCTGTAT
GTTGATCCTATAAGCAGGCAGTTTATTGATGCCAATCAAGCGATTCATATATTGTCACAACAGAAACGAAACCTAACCAA
TCAAAGGATTAAACGTTCTTGGGTGAGTAAACAATATGGAAAATTACAGCATCTTTATCGTGCGTTTAAATATGCTTCCC
ACACTAAATAA

Protein sequence : 
MLSYLVFFSKIIKIPNLKGFLPHCEIRRRPLVGKTFIAQKRPNQIIGWGLRPSAVGSRAYAQKHQLPYIALEDGFLRSLG
LGVKGYPPFSLVYDDIGIYYDTTCPSRLEKLLLEKPLQDQEQIKLAERALSQILTYGLSKYNHALDFSEIPSAKEKIVLV
IDQTFGDMAVKYGQASEVDFNKMLETAISENPEAQIWVKTHPDVLSGKKKGYLTDLPQYTDRVRIITEDVNPASLIKLCE
KVYCVTSQMGFEALLLGKKVVTFGVPWFAGWGVTDDRNEAVQLLVQQNRRKDRSLLQLFYAAYFDYSRYINPNTGEKGSI
FDVIDYLYKAKRLNQRLSGNLYCIGMSLWKQAVIKPFFNLPQCRLHFVRSLNSLKKRPLADNAKILVWSNGKADVLQFAQ
QNNIPLLRMEDGFIRSVGLGANLVAPLSLVVDDLGIYFNAENTSRLEQILLSAEHFSETDLSYAETLRQKLVASHIGKYN
VGGGDVKFNAQGKKIILVPGQVEDDASIKSGSPQIKRNLDLLKKVRELNPSAYIIYKPHPDVVSGNRVGQIPTAETRRFA
DQMVDNANILDCILIADEVHTMTSLAGFEALLRGKKVHCYGLPFYAGWGLTEDRLKSARRGKSLTLSQLIAATLIYYPLY
VDPISRQFIDANQAIHILSQQKRNLTNQRIKRSWVSKQYGKLQHLYRAFKYASHTK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lipA NP_273145.1 capsule polysaccharide modification protein Not tested IHT-A Protein 0.0 59
kpsC YP_854335.1 capsule polysaccharide export protein KpsC Not tested PAI I APEC-O1 Protein 2e-137 49
kpsC AAZ04470.1 capsule polysaccharide export protein Virulence PAI I APEC-O1 Protein 1e-137 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
N220_13920 YP_008340169.1 capsule polysaccharide transporter VFG0692 Protein 0.0 60
N220_13920 YP_008340169.1 capsule polysaccharide transporter VFG0704 Protein 0.0 60
N220_13920 YP_008340169.1 capsule polysaccharide transporter VFG0259 Protein 0.0 59