Gene Information

Name : N220_13915 (N220_13915)
Accession : YP_008340168.1
Strain : Mannheimia haemolytica USMARC_2286
Genome accession: NC_021883
Putative virulence/resistance : Virulence
Product : capsule polysaccharide transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2642333 - 2643565 bp
Length : 1233 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGGAACATTATTTAGATGAGCTAATCATCAATAGCCAGAGAATTTTATTGTTACAAGGCCCGATAGGCTCTTTTTTCAC
TGAGTTTGCCCGTTGGTTAGAAAGTGAGCAAAAAGAGGTCTTCAAGTTAAATTTTAATGGCGGAGATGAATATTTCTATC
CAAATAATAGCCCGAATACTTTTCCTTACTATGATAGCTTAGATAATTTTGAAGCCTATTTAATTCAGTTTTGCCAAACT
CATCAAATAGATAATATCTTATGTTTTGGCGATAATCGTTATTATCATAAAGTGGCTAAAAACGTTTGCTTGAAGTTAAA
GTTGGTCTTTTGGGCGTTTGAAGAAGGGTACTTTAGGCCAGAATATATTACGTTGGAAAAATGGGGTGTAAATGCTTTTT
CTCCAATCCCTAAAAATCACACTTTCTTTTTGCCTTATGCCGAGTTACCAGTAGTCAGTGAACCAGAAAAAGTATCTAAA
GGCTTTAGATGTATGGCGGGAAAAGCAATCCCGTACTATTGGAATGCCTATAAAAAACGTAAAGCATACGCAAAATATCA
GCATCATCGTTTTCTGAATCTCAAATACTACCTTAATTTATGGACAAGGTCGGGAATTAAGCGAATATGTTATTGGTTAC
ATGATAAAGGCTTTGCCAAGCGGGTAGAAAAAGGAGAGTTTGGTGAATTTTTCATTGTGCCTCTACAAGTTTATGATGAC
ACTCAAGTGAGGATTCATAGTGAACAAAAAAGTGTAGAGCGTTTTTTAAGGGAAGTTCTGAATTCCTTTGCCAAATTTGC
ACCGGCACATCTCAATTTAATTATTAAGCATCACCCGATGGATAGAGGATTTATAGATTATAAAATGGTGATTTATGAAT
TCTTAGAGCAATATCCCCAATTAAACGGTAGAGTTTTTTATATTCACGATGTGCCGTTACCTGTCTTTTTACGTTATGGG
AAAGGAATGGTGACTTTAAATTCAACCAGTGGGCTTTCTGCATTGCTCCATAATATGCCGGTCAAAACCTTAGGTAGAGC
CAATTATGATTTTGAGGGATTAACCGATAAACAGCCATTAGATACTTTTTGGGCTAATCCTCAGCCACCTAATTCGGAAG
TATTTAAAGGCTACAGACAATTTCATTTACATAAAACGCATATTAACGGTAATTTTTACCATAAATCGATTTTGCGTTAT
CCTTATAATTGGGAAAATGAAGCACACAGGTGA

Protein sequence : 
MEHYLDELIINSQRILLLQGPIGSFFTEFARWLESEQKEVFKLNFNGGDEYFYPNNSPNTFPYYDSLDNFEAYLIQFCQT
HQIDNILCFGDNRYYHKVAKNVCLKLKLVFWAFEEGYFRPEYITLEKWGVNAFSPIPKNHTFFLPYAELPVVSEPEKVSK
GFRCMAGKAIPYYWNAYKKRKAYAKYQHHRFLNLKYYLNLWTRSGIKRICYWLHDKGFAKRVEKGEFGEFFIVPLQVYDD
TQVRIHSEQKSVERFLREVLNSFAKFAPAHLNLIIKHHPMDRGFIDYKMVIYEFLEQYPQLNGRVFYIHDVPLPVFLRYG
KGMVTLNSTSGLSALLHNMPVKTLGRANYDFEGLTDKQPLDTFWANPQPPNSEVFKGYRQFHLHKTHINGNFYHKSILRY
PYNWENEAHR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lipB NP_273146.1 capsule polysaccharide modification protein Not tested IHT-A Protein 1e-93 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
N220_13915 YP_008340168.1 capsule polysaccharide transporter VFG0705 Protein 2e-116 61
N220_13915 YP_008340168.1 capsule polysaccharide transporter VFG0693 Protein 2e-116 61
N220_13915 YP_008340168.1 capsule polysaccharide transporter VFG0260 Protein 5e-94 53