Gene Information

Name : N220_08285 (N220_08285)
Accession : YP_008339101.1
Strain : Mannheimia haemolytica USMARC_2286
Genome accession: NC_021883
Putative virulence/resistance : Unknown
Product : conjugal transfer protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1582399 - 1582797 bp
Length : 399 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGAAAGCTTTATATTGCATAATGATGAGTGCCTTATTGATAACAGGTTGCACAACTTCAACTGAAGAATTATTACCCGC
TAACGGCAGTACGATGCGAGATATTTGGGATAAAGGAGCAGGTAATAACGATCTACACTTATACCGTTCACAACAAGGAC
GAACACTCGATCCTGTCGATTATATTCCTAACACTGAGCAACGAGCCTATACCCGTACGGCAGAAAATGAAATTAATAAC
TTGTTCCCTCGTTTACCTAATCCGGATCTGATTATGTATGTGTATCCACACCAAACTCGTTCCGGAGAGCCTCTTAGTAT
TCCAGGATATTCTACGGTATTACCTTTCTACGGGCGAGTCCAATATGCTCAACCGGGTGATCGAACAAGAGGGCTTTGA

Protein sequence : 
MKALYCIMMSALLITGCTTSTEELLPANGSTMRDIWDKGAGNNDLHLYRSQQGRTLDPVDYIPNTEQRAYTRTAENEINN
LFPRLPNPDLIMYVYPHQTRSGEPLSIPGYSTVLPFYGRVQYAQPGDRTRGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Pmu_03080 YP_005176207.1 conjugative transfer region lipoprotein Not tested ICEPmu1 Protein 3e-57 96
RL023 AAP84150.1 conserved hypothetical protein Not tested PAPI-1 Protein 3e-24 48
ORF SG58 AAN62280.1 hypothetical protein Not tested PAGI-3(SG) Protein 2e-19 48
unnamed ABR13363.1 hypothetical protein Not tested PAGI-5 Protein 5e-20 47
EXA34 ABD94643.1 conserved hypothetical protein Not tested ExoU island A Protein 2e-24 47
pph83 CAI36124.1 signal recognition particle GTPase Not tested PPHGI-1 Protein 4e-24 46
ORF C48 AAN62142.1 hypothetical protein Not tested PAGI-2(C) Protein 9e-19 46
PMI2577 YP_002152296.1 lipoprotein Not tested Not named Protein 8e-21 45
YE3483 YP_001007642.1 putative lipoprotein Not tested YAPI Protein 5e-23 43
YpsIP31758_3706 YP_001402660.1 lipoprotein Not tested YAPI Protein 8e-22 42
api38 CAF28512.1 putative lipoprotein Not tested YAPI Protein 1e-21 41