Gene Information

Name : N220_08280 (N220_08280)
Accession : YP_008339100.1
Strain : Mannheimia haemolytica USMARC_2286
Genome accession: NC_021883
Putative virulence/resistance : Unknown
Product : conjugal transfer protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1579562 - 1582399 bp
Length : 2838 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence :
ATGATGTCTTTTTTAAGTGAGGTATTTTCCTCTTTCAAACCGACTAAGACAGAGGTTATATCAAGTGAACCAAATGAAAA
TTCAGGTGAGTCTGACATCATTCAAAATAAAATGAGTGAGGTAAATGGCGAGGTTCAACCATTAAAACGCAGTGGAAAAC
TCACCCTGTCACAGCATCACCGTCGGTTATACTCACAAGCCCCCTCTTTTATTGATCATCTACCTTGGGGAGAATATTTG
AATCAACACGGTGTGATACTCCTCGATGATGCTCGTAGTGTCGGGGCGGTATTTGATATCAAGCCGATTGGTACAGCAGG
ACGTAGTATTGAGTTTTTAAGCAGGATACGAAATCTTGTCAAAGATGCCTTACAAGATAGCTTTGATGAGCTGGATATAA
ATCCTTACGTCGTGCAATTTTATTGCCAAGATAGCGATGATTTACAGCCTTATATTGATCAGCTACGGAATTATATCTCG
CCTATTGCCCAAAATAGTGCATTTAGCGAAGAATGGTTACGAGTACAAGCCAAGCATTTCAAGGATATTGGTAAACCAGA
AGGGCTTTTTATTGATGACAGAGTGACAAATACAGCTTGGTCTGGACGTATTCGGAGTACCAAAATGGTGATTTATCGAT
ATGTAGATAAGTCCAATGATTCCAATGAAAATCTTATTATTGAGCAGCTTAATAATGCTTGTTCCCGAATCAATGGGGCT
CTAACAACGGCTGGATTACAGTTACAGCGGCTAGATGGTGAACAAATTCGCCAATGGTTATTGCGTTGGTTTAATCCTAA
TCCATCTATTAATTTTGAGGGATTAAGCAACAATGATTGTTACCATCTTTTTGGCAAACAAACCTCAAATGATGATCTTC
CATTAGCTTTTACTGATTTCAGTGAGGATTTATTTTATTCACAGCCGAGAAATGAAGGTAGCTATTGGTATTTTGACGGA
CAGCCACACGAGGTTGTTGTCGTCAATAATTTAAGAAAACAACCAGAAGTGGGCTTAATGACCGGCGAGATTACTCGTGG
GCGTAATATTAATGCGTTATTTGACCTATTGCCAGAATCAACCATCATGGCAATTACCATCGTCATCCATCCTCAGGATA
AGTTGGAAGCACATTTAGAAAAAATCAGTAGTCGAGCAGTGGGTGAGAATTTTGAGTCAAAATACCTAAAAGAAGACTGT
CAAACTGTACAGGCTTATCTTAAAGAGGGTCATAAACTCTATCAAGCAGCTATTGCATTTTACGTTCGAGGTAAGGACGA
AAAGGAATTGCGTACTCGATCTCGCCAACTAAGAACAATTCTGCTCAGTAACAATTTAGAGCCGGTAAAGGAAAACGCAG
AAATTGCTCCTCTTAATAGTTACCTACGTTGGCTACCAATGAATTTTAATCCGCAGATGGATGCCAAATCCCATTACTAC
ACGAAGTACTATTTTGTACAACATTTGGCAAACTTATTGCCTATCTTTGGTCGAGATACAGGCACTGGTAATCCGGGGAT
TACTTACTTTAATCGAGGAGGAGCTCCGTTTAATTTCGATCCGTTTAACCGTAAAGACAGAACCAAAAACGCTCACAAAC
TCTTATTAGGACCAACAGGCTCAGGAAAATCAGCAACACTATGTGGGCAATTATGTCAGGCTATGGCCGTTTATCGTCCT
CGGACGTTTGTTGTGGAGGCAGGAAATTCATTTGGTTTATTAGCGGACTATGCAGAACGTTTTGGACTGACCGTAAATCG
CATTACGTTAGCCCCAAACAGTGGCATTGTCTTACCGCTCTTTTCAGAAGCCCATCGGTTATTGGATATGGAATTAAATC
CGGAAGATGTGCCGGAAGACATTGAGGATAACGATGACACTGATGATGAAGGCGATATGCAACGAGATTTGTTGGCCGAA
ATGGAGCTGACAGCACGTTTAATGATCACTGGTGGCGAAAAGAAAGAAGATGAAAAAATGAGCCGTGCTGACAGAGCAGC
CATTCGACGTGCCATTTTAAATGCGGCTCGCCAAACTAAATCCGAAGGCAGACAAACGCTAACTGAAGATGTGAAAAAGG
CATTGGAGGCTATAAGCCGTGATGAAAATACTCGTGAAGAACGGCGTACTCGTTTGGCCGAAATGGCAGAATCATTGGAA
ATGTTCTGTACCGGAGTCAATGGACAATTTTTCAACCGGGAAGGCGAAATTTGGCCGGAAGCAGATCTGACATTGGTTGA
TCTAGCCATGTTTGCCCGGGAAGGTTATGAAGCAGAATTGGCCATTTCCTATATTTCACTCATTAACCATATCAACAGTC
TCGGTGAAAAATACCAGCATAGCGACAGGATGATTCTGAATGTAACCGATGAATCACACATTATCACTGCCAACCCATTA
TTAGCGAAATTCTTGGTGAAAGGCTCAAAAATGTGGCGTAAATTAGGGATTTGGCTGTGGCTTGCGACACAGAATATGGA
TGACTTCCCCAATGAAGCAGCGAAATTGCTCTCAATGGTCGAATGGTGGGAACTGTTGAATGTGTCTGCTAGTGAAATTG
ATGAAATCAATCGCTTCCGGAAACTGTCCGAAGCTCAGAAAACGATGTTGTTATCTGCCAAAAAATCAGATCGTAAATAT
ACCGAAGGTGTGGTATTGGCAACAAATATGGAAGCGCTATTCCGTGTTGTACCACCGAGTTTATTTTTGGCTTTAGGAAT
GACCGAGAAACACGAAAAAGCAGAACGTCGGCAATTAATGATGCAACATGGTTATTCTGAATTAGATGCTGCTTTAGAAG
TCGCTGCTCGTATTGATAAAGCGAGGGGAATTGCATAA

Protein sequence :
MMSFLSEVFSSFKPTKTEVISSEPNENSGESDIIQNKMSEVNGEVQPLKRSGKLTLSQHHRRLYSQAPSFIDHLPWGEYL
NQHGVILLDDARSVGAVFDIKPIGTAGRSIEFLSRIRNLVKDALQDSFDELDINPYVVQFYCQDSDDLQPYIDQLRNYIS
PIAQNSAFSEEWLRVQAKHFKDIGKPEGLFIDDRVTNTAWSGRIRSTKMVIYRYVDKSNDSNENLIIEQLNNACSRINGA
LTTAGLQLQRLDGEQIRQWLLRWFNPNPSINFEGLSNNDCYHLFGKQTSNDDLPLAFTDFSEDLFYSQPRNEGSYWYFDG
QPHEVVVVNNLRKQPEVGLMTGEITRGRNINALFDLLPESTIMAITIVIHPQDKLEAHLEKISSRAVGENFESKYLKEDC
QTVQAYLKEGHKLYQAAIAFYVRGKDEKELRTRSRQLRTILLSNNLEPVKENAEIAPLNSYLRWLPMNFNPQMDAKSHYY
TKYYFVQHLANLLPIFGRDTGTGNPGITYFNRGGAPFNFDPFNRKDRTKNAHKLLLGPTGSGKSATLCGQLCQAMAVYRP
RTFVVEAGNSFGLLADYAERFGLTVNRITLAPNSGIVLPLFSEAHRLLDMELNPEDVPEDIEDNDDTDDEGDMQRDLLAE
MELTARLMITGGEKKEDEKMSRADRAAIRRAILNAARQTKSEGRQTLTEDVKKALEAISRDENTREERRTRLAEMAESLE
MFCTGVNGQFFNREGEIWPEADLTLVDLAMFAREGYEAELAISYISLINHINSLGEKYQHSDRMILNVTDESHIITANPL
LAKFLVKGSKMWRKLGIWLWLATQNMDDFPNEAAKLLSMVEWWELLNVSASEIDEINRFRKLSEAQKTMLLSAKKSDRKY
TEGVVLATNMEALFRVVPPSLFLALGMTEKHEKAERRQLMMQHGYSELDAALEVAARIDKARGIA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Pmu_03070 YP_005176206.1 conjugative transfer ATPase TraC-like, PFL family Not tested ICEPmu1 Protein 0.0 97
YE3482 YP_001007641.1 hypothetical protein Not tested YAPI Protein 0.0 52
virB4 CAI36125.1 VirB4 component Not tested PPHGI-1 Protein 0.0 52
api39 CAF28513.1 hypothetical protein Not tested YAPI Protein 0.0 51
ORF SG57 AAN62279.1 hypothetical protein Not tested PAGI-3(SG) Protein 0.0 51
YpsIP31758_3705 YP_001402659.1 hypothetical protein Not tested YAPI Protein 0.0 50
unnamed ABR13362.1 hypothetical protein Not tested PAGI-5 Protein 0.0 50
STY4573 NP_458658.1 hypothetical protein Not tested SPI-7 Protein 1e-173 49
ORF C47 AAN62141.1 hypothetical protein Not tested PAGI-2(C) Protein 0.0 49
PMI2576 YP_002152295.1 hypothetical protein Not tested Not named Protein 0.0 48
RL022 AAP84149.1 conserved hypothetical protein Not tested PAPI-1 Protein 0.0 48
EXA33 ABD94642.1 conserved hypothetical protein Not tested ExoU island A Protein 0.0 48