Gene Information

Name : N220_00700 (N220_00700)
Accession : YP_008337620.1
Strain : Mannheimia haemolytica USMARC_2286
Genome accession: NC_021883
Putative virulence/resistance : Virulence
Product : Leukotoxin-activating lysine-acyltransferase lktC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 138120 - 138575 bp
Length : 456 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGAACTCCTCCCTCCACAAAGAATGGAGCTGTGAACTACTAGCACGCAATGTGATTCCTGCAATTGAAAATGAACAATA
TATGCTACTTATAGATAACGGTATTCCGATCGCTTATTGTAGTTGGGCAGATTTAAACCTTGAGACTGAGGTGAAATATA
TTAAGGATATTAATTCGTTAACACCAGAAGAATGGCAGTCTGGTGACAGACGCTGGATTATTGATTGGGTAGCACCATTC
GGACATTCTCAATTACTTTATAAAAAAATGTGTCAGAAATACCCTGATATGATCGTCAGATCTATACGCTTTTATCCAAA
GCAGAAAGAATTAGGCAAAATTGCCTACTTTAAAGGAGGTAAATTAGATAAAAAAACAGCAAAAAAACGTTTTGATACAT
ATCAAGAAGAGCTGGCAACAGCACTTAAAAATGAATTTAATTTTATTAAAAAATAG

Protein sequence : 
MNSSLHKEWSCELLARNVIPAIENEQYMLLIDNGIPIAYCSWADLNLETEVKYIKDINSLTPEEWQSGDRRWIIDWVAPF
GHSQLLYKKMCQKYPDMIVRSIRFYPKQKELGKIAYFKGGKLDKKTAKKRFDTYQEELATALKNEFNFIKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hlyC CAD42040.1 HlyC protein Virulence PAI II 536 Protein 4e-31 52
hlyC CAD33758.1 hemolysin C Virulence PAI I 536 Protein 4e-31 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
N220_00700 YP_008337620.1 Leukotoxin-activating lysine-acyltransferase lktC VFG0842 Protein 1e-28 53
N220_00700 YP_008337620.1 Leukotoxin-activating lysine-acyltransferase lktC VFG1559 Protein 2e-31 52
N220_00700 YP_008337620.1 Leukotoxin-activating lysine-acyltransferase lktC VFG1499 Protein 2e-31 52