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Name : lysS (N220_05470) Accession : YP_008338552.1 Strain : Mannheimia haemolytica USMARC_2286 Genome accession: NC_021883 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 1071428 - 1072930 bp Length : 1503 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCTGAAGTAGAAAATCAAGAATTAGATCTAAACGGTGAAATGTTAGCCCGCCGTGAAAAATTAAACAAAATCCGTGA GCAGGGTAACGCATTTCCAAATACATTCCGTCGTGATGCGTTAGCCAAAGATCTGCACGCTCAATATGATGCAGTGGAAG GTGAAACCTTAAAAGAACAGAATATTCAAGTGAAAGTTGCCGGTCGTATTATGTTAAAACGAGTAATGGGTAAGGCATCT TTCTTTACCATTCAAGATGTGAGCGGTGCGATTCAGCTTTATGTAGCTCGTGATAACTTAAGTGACAGCGTTTACGAAGA AAAAGTCAGCCTTTGGGATTTAGGCGACATTGTGGGCGTCGAAGGTGCGTTATTTAAAACCAAAACCGGTGAATTAACGG TTCGTTGCTCTGAAGTTCAACTTTTAACCAAGTCTTTACGCCCGTTGCCGGATAAACATCACGGTTTAACGGATTTAGAA ACTCGTTATCGTCAGCGTTATTTAGACTTGATTTCTAATGAAGAATCTCGCCGTACTTTTATGATCCGCTCGCAAGTAGT TTCAGGCATTCGCAAATTCTTCTTAGAAAGAGACTTTATTGAAGTTGAAACGCCAATGTTGCAAGTGATCCCGGGCGGTG CGGCAGCGAAACCGTTTATCACTCATCATAATGCGTTAGATGTGGATATGTATCTGCGTATTGCTCCAGAGCTTTACTTA AAACGTTTAGTTGTGGGTGGTTTTGAGCGAGTATTTGAGCTTAACCGTAACTTCCGTAACGAAGGGGTTTCAGTACGCCA CAATCCTGAATTTACAATGATTGAGTACTACCAAGCCTATGCGGATTATCACGATTTAATGGATAATACCGAAGAACTGT TACGCCAATTAGCCTTAGATATTCTTGGCACAACTGACGTACCTTATGGTGATTATGTATTCGATTTCGGTAAACCGTTT GAGCGTATTACGATGCACGATGCGATTGTGAAATATGGTAACGGCATTCAACGTGAAGATTTAGACAGCTTCGAGAAAAG TGTGGAAATTGCGAAAGGCTTAGGCATTGAAATTCAAAAATCTTGGGGTTTAGGCTCGGTAGTCAATGCGATTTTTGAAG AAGTGGCAGAACATCAATTAATTCAGCCAACTTTCTTGATGGCTCACCCGGCAGAAATTTCACCATTAGCTCGCCGTAAT GATGAAAACCCAGAGGTAACTGATCGTTTTGAGTTATTTATCGGTGGTCGTGAAATTGGTAATGGTTTCTCAGAATTAAA CGATGCAGAAGACCAAGCAGAGCGTTTTGATGCTCAAGTTGCGGCGAAAGATGCCGGTGATGATGAAGCAATGTTTAAAG ATGAAGACTTTATCGTGGCATTGGAACACGGTCTGCCGCCAACAGCGGGTGAAGGTTTAGGAATTGACCGCTTAGTAATG ATTTTCGCTAACGCCCCATCAATCCGTGATGTAATTTTATTCCCAGCGATGCGTCAGAAGTAA Protein sequence : MSEVENQELDLNGEMLARREKLNKIREQGNAFPNTFRRDALAKDLHAQYDAVEGETLKEQNIQVKVAGRIMLKRVMGKAS FFTIQDVSGAIQLYVARDNLSDSVYEEKVSLWDLGDIVGVEGALFKTKTGELTVRCSEVQLLTKSLRPLPDKHHGLTDLE TRYRQRYLDLISNEESRRTFMIRSQVVSGIRKFFLERDFIEVETPMLQVIPGGAAAKPFITHHNALDVDMYLRIAPELYL KRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMIEYYQAYADYHDLMDNTEELLRQLALDILGTTDVPYGDYVFDFGKPF ERITMHDAIVKYGNGIQREDLDSFEKSVEIAKGLGIEIQKSWGLGSVVNAIFEEVAEHQLIQPTFLMAHPAEISPLARRN DENPEVTDRFELFIGGREIGNGFSELNDAEDQAERFDAQVAAKDAGDDEAMFKDEDFIVALEHGLPPTAGEGLGIDRLVM IFANAPSIRDVILFPAMRQK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-149 | 62 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 4e-86 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_008338552.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-149 | 62 |
