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Name : smpB (N220_05175) Accession : YP_008338493.1 Strain : Mannheimia haemolytica USMARC_2286 Genome accession: NC_021883 Putative virulence/resistance : Unknown Product : single-stranded DNA-binding protein Function : - COG functional category : - COG ID : - EC number : - Position : 1008662 - 1009141 bp Length : 480 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGCAAAAAAACCTAAAGTTGCATCAAATACGATTGCGTTAAATAAACGTGCCAGACACGAATATTTCATTGAAGATGA AATTGAAGCCGGCTTAGAGCTACAGGGCTGGGAAGTCAAAGCATTGCGTGCCGGAAAAGGCAATATCAGCGATAGCTATG TCATCTTTCGCCACGGCGAAGCCTTCTTATTCGGGGCAATGATTACGCCTTTGAATATGGCATCAACCCATATTGTCAGC GACCCGACCCGCACCCGCAAACTTCTACTGAATAAACGTGAGTTAGACTCACTGTTCGGTAAAGTTAATCGTGAAGGTTA TACCATTGTTGCCACCTCAATGTATTGGAAAAATGCGTGGGTGAAAGTAAAAATCGGCTTAGCCAAAGGGAAAAAACTGC ACGATAAACGTGAAGATATTAAAGACCGTGAATGGCAAGTGGCTAAACAGCGTATTATGAAAAACGCCAATCGTGGCTAA Protein sequence : MAKKPKVASNTIALNKRARHEYFIEDEIEAGLELQGWEVKALRAGKGNISDSYVIFRHGEAFLFGAMITPLNMASTHIVS DPTRTRKLLLNKRELDSLFGKVNREGYTIVATSMYWKNAWVKVKIGLAKGKKLHDKREDIKDREWQVAKQRIMKNANRG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 1e-50 | 68 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 1e-22 | 43 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 4e-19 | 42 |
