Gene Information

Name : K748_08035 (K748_08035)
Accession : YP_008337461.1
Strain : Helicobacter pylori UM298
Genome accession: NC_021882
Putative virulence/resistance : Virulence
Product : sodium:calcium antiporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1580416 - 1581039 bp
Length : 624 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
TTGATCAACAATAATAGTAATAAAAAAATAAGAGACTTTTTTTTGAAAGTTCTCTTAAGTATCGTTGTTTTCAGTTCGTA
TGGGTTGGCAAATGATGATAATCAAGCGAAAAAAGAAGCGCCAGAAAAAGAAAAAAACACTCCTAGTGGGCGTGTTTATA
CGAATTTAGATTTTGATAGTTTCAAGGCGACTATCAAAAATTTGCAAGACAAGAAAGTAACTTTCAAAGAAATCAATCCC
GATATTATCAAAGATGAAGTTTTTGATTTCGTGATTGTCAATAGAGTCCTTAAAAAAATAAAGGATTTGAAGCATTACGA
TCCAATCATTGAAAAAATCTTTGATGAAAAGGGTAAAGAAATGGGATTGAATGTAGAATTGCAGATCAATCCTGAAGTGA
AAGACTTTTTCACTTTCAAAAGCATCAGCACGACCAACAAACAACGCTGCTTTCTGTCATTGCGCGGAGAAACAAGAGAA
ATTCTATGCGATGATAAGCTATATAATGTTTTATTGGCCGTATTCAATTCTTATGATCCTAATGATCTTTTGAAACACAT
TAGCACCGTAGAGTCTCTCAAAAAAATCTTTTATACGATTACATGTGAAGCGGTATATCTATAA

Protein sequence : 
MINNNSNKKIRDFFLKVLLSIVVFSSYGLANDDNQAKKEAPEKEKNTPSGRVYTNLDFDSFKATIKNLQDKKVTFKEINP
DIIKDEVFDFVIVNRVLKKIKDLKHYDPIIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLRGETRE
ILCDDKLYNVLLAVFNSYDPNDLLKHISTVESLKKIFYTITCEAVYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0545 BAD13961.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-89 98
HP0545 BAD13797.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-88 97
HP0545 BAD14070.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-88 97
cagD YP_005774526.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-88 97
HP0545 BAD13851.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-89 97
cagD YP_005779048.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-88 97
cagD YP_005775745.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-88 96
HP0545 BAD14016.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-87 96
cag24 AAR03879.1 Cag24 Virulence cag PAI Protein 7e-88 96
HP0545 BAD13878.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-88 96
HP0545 BAD13824.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-86 96
HP0545 BAD13933.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-86 96
cag24 AAR03937.1 Cag24 Virulence cag PAI Protein 1e-85 96
HP0545 BAD14043.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-87 95
HP0545 BAD13906.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-87 95
cag24 AAR03907.1 Cag24 Virulence cag PAI Protein 6e-86 95
cag24 AAR03968.1 Cag24 Virulence cag PAI Protein 2e-86 95
HP0545 BAD13988.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-86 95
cagD YP_003728719.1 cag pathogenicity island protein D Virulence cag PAI Protein 6e-85 95
cagD AAF80210.1 CagD Virulence cag PAI Protein 2e-84 95
HP0545 NP_207341.1 cag pathogenicity island protein (cag24) Virulence cag PAI Protein 8e-86 94
cagD YP_005777286.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-86 94
cagD NP_223211.1 cag island protein Virulence cag PAI Protein 1e-82 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
K748_08035 YP_008337461.1 sodium:calcium antiporter VFG0304 Protein 2e-86 94