Gene Information

Name : BDL_4970 (BDL_4970)
Accession : YP_008328747.1
Strain :
Genome accession: NC_021877
Putative virulence/resistance : Virulence
Product : type III secretion , HrpO family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1837747 - 1838010 bp
Length : 264 bp
Strand : -
Note : fliQ_rel_III: type III secretion , HrpO family protein

DNA sequence : 
ATGGAAATCGACGACCTGATCCGGCTCACGTCGCAAGGCATGATGCTGTGTCTCTACATCTCGCTGCCGGTCGTGCTCGT
CGCGGCCGCCTCCGGCCTGGCGATCTCGTTCCTGCAGGCAATCACGTCGCTGCAGGAGCAGAGCATCTCGTACGGCGTGA
AGCTCGTCGCGGTGACGGTGACCGTCGCGATCGCCGGGCCGTGGGCGGCCGCCGAGATCCTGCATTTCGCGCAGCAACTG
ATGTCCGCGGCGGTGCCGTCGTGA

Protein sequence : 
MEIDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTVTVAIAGPWAAAEILHFAQQL
MSAAVPS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS AAD21322.1 HrcS Virulence Hrp PAI Protein 1e-16 54
hrcS BAB07863.1 HrcS Virulence Hrp PAI Protein 9e-17 54
hrcS AAP34350.1 HrcS Virulence Hrp PAI Protein 9e-17 54
hrcS YP_362152.1 HrcS protein Virulence Hrp PAI Protein 1e-16 54
hrcS YP_198719.1 hypothetical protein Virulence Hrp PAI Protein 1e-16 54
hrcS NP_640756.1 HrcS protein Virulence Hrp PAI Protein 1e-16 54
XC_3017 YP_244085.1 HrcS protein Virulence Hrp PAI Protein 1e-14 53
hrcS NP_636599.1 HrcS protein Virulence Hrp PAI Protein 1e-14 53
lscS AAO18039.1 LscS Virulence TTSS locus Protein 4e-09 42
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 3e-11 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BDL_4970 YP_008328747.1 type III secretion , HrpO family protein VFG0395 Protein 1e-09 43
BDL_4970 YP_008328747.1 type III secretion , HrpO family protein VFG0043 Protein 2e-10 43
BDL_4970 YP_008328747.1 type III secretion , HrpO family protein VFG0187 Protein 1e-04 42