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Name : lysS (N134_01395) Accession : YP_008325631.1 Strain : Lactobacillus reuteri TD1 Genome accession: NC_021872 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 342830 - 344347 bp Length : 1518 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : GTGTCACAAGAACTAGATCAAATGCGCGTTCGGCGTGAAAAAATGGAAGAGTTAAAAGAAGCGGGGATTGAACCATTTGG CCGCCGCTTCAAACGAGACCATCTTGCCCAAGACTTGCATGATAAGTTTGATCAATACGATAAAGAAGAATTAAACGAGA TGGGCGCCAAAGTAATTATTGCGGGTCGAATGACAAGAAAGCGGAGTAGTGGTAAGGCTGGGTTCGCTGACTTTGTTGAT CGGACTGGTAAGATTCAAGTTTACGCTCGTAAGGATATGGTCGGGGATGAGCCTTACCATGTTTTCAAGCGGTCAGATAT TGGTGACTTCCTTGGAATTGAAGGGGATGTTATCAAGACAGATACAGGTGAATTAACTGTTCGTGCACATAAAATTACCT TCTTGTCAAAAGCATTGCGTCCGCTTCCTAATAAGTGGGATGGGGTTACTGATCCTGAAACTATCTATCGTCAGCGCTAC CTTGATTTAATTTCTAACCCAGAAAGCTTCAAGCGTTTCCACCAACGGACAGCGATCATCAAGGCCGTCCGGAAGTACAT GGATGATAATGGCTTTACAGAGGTTGAAACTCCAATTTTGAACACCCAAGCTGGTGGTGCTAATGCGCGGCCATTTATCA CTCACCATAATGCGCTTGATATTGATATGTACTTGCGGATTGCTACCGAATTGTACCTTAAGCGGTTAATCGTTGGTGGC TTTGAACGGGTATACGAATTGGGCCGGATTTTCCGGAATGAAGGGATGGACCCTCACCATAACCCTGAATTTACGACAAT GGAAACTTATGCTGCTTACTTTGACTTCCAAGATGTTATGGATGAAACAGAAGGAATCGTTAAGGCAGCAGCTAAAGTTG TTTCAGATGATGGAAAGATTACTTACCAAGGACGTGAAATCGACCTTGGAGGAAACTTTAAACGGATTACGATGGTAGAT GCCGTTAAGGAAAAGACTGGCATTAACTTTAGCGATGAATCAATGACGGACGAAGATGCTAAGAAGTTAGCCGATGAACA TAAGGTTGAATATAAGCCTTACTGGACAAAGGGCCATATCTTGAATGCATTCTTTGAAGAGTTCGTTGAAGATACACTGA TTCAACCAACTTTTGTCTATGAATTCCCAGTCGAAGTTTCACCATTAGCAAAGCGGAATGCTGATAATCCTGCGATGACT GATCGTTTCGAATTGTATGTTGATGGTAGCGAATTGGCAAATGCCTTTAGTGAATTAAACGATCCAATTGATCAGAAGGA ACGTTTTGAAATGCAAGCAAAGGAAAAAGCTAATGGTAATGATGAAGCTGAACCAGTCGACTTAGATTACGTTCAAGCCC TCGAATACGGGATGCCACCTACTGGGGGACTTGGTATTGGAATCGACCGTCTTGTAATGCTCCTTACTGATGCTAAATCT ATTCGGGATGTTATTCTCTTCCCAACAATGCGTCCAGAAAAGGAAGCTAAGAACGATTCAAAGAAAAAGAAGAAGTAA Protein sequence : MSQELDQMRVRREKMEELKEAGIEPFGRRFKRDHLAQDLHDKFDQYDKEELNEMGAKVIIAGRMTRKRSSGKAGFADFVD RTGKIQVYARKDMVGDEPYHVFKRSDIGDFLGIEGDVIKTDTGELTVRAHKITFLSKALRPLPNKWDGVTDPETIYRQRY LDLISNPESFKRFHQRTAIIKAVRKYMDDNGFTEVETPILNTQAGGANARPFITHHNALDIDMYLRIATELYLKRLIVGG FERVYELGRIFRNEGMDPHHNPEFTTMETYAAYFDFQDVMDETEGIVKAAAKVVSDDGKITYQGREIDLGGNFKRITMVD AVKEKTGINFSDESMTDEDAKKLADEHKVEYKPYWTKGHILNAFFEEFVEDTLIQPTFVYEFPVEVSPLAKRNADNPAMT DRFELYVDGSELANAFSELNDPIDQKERFEMQAKEKANGNDEAEPVDLDYVQALEYGMPPTGGLGIGIDRLVMLLTDAKS IRDVILFPTMRPEKEAKNDSKKKKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-113 | 47 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 1e-84 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_008325631.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 7e-114 | 47 |
