Gene Information

Name : A464_4258 (A464_4258)
Accession : YP_008324851.1
Strain : Salmonella bongori N268-08
Genome accession: NC_021870
Putative virulence/resistance : Resistance
Product : Regulatory protein SoxS
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4300618 - 4300941 bp
Length : 324 bp
Strand : -
Note : -

DNA sequence : 
ATGTCGCATCAGCAGATAATTCAGTCCCTTATTGAATGGATTGATGAACATATCGACCAACCGTTGAACATTGATGTTGT
GGCCAAAAAATCGGGTTACTCCAAGTGGTATCTGCAGCGGATGTTCCGTACGGTAACGCATCAAACATTAGGCGAGTATA
TTCGCCAGCGCCGTCTCCTGCTGGCGGCGGTTGAACTACGGACGACCGAGCGCCCGATTTTTGATATCGCGATGGACCTG
GGTTATGTATCGCAACAAACCTTTTCGCGTGTCTTCCGCCGCGAGTTCGATCGTACCCCCAGTGATTATCGTCACCGTCT
GTAG

Protein sequence : 
MSHQQIIQSLIEWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGEYIRQRRLLLAAVELRTTERPIFDIAMDL
GYVSQQTFSRVFRREFDRTPSDYRHRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 2e-46 99
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 3e-21 50
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 3e-21 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A464_4258 YP_008324851.1 Regulatory protein SoxS CP001138.1.gene4488. Protein 6e-47 99
A464_4258 YP_008324851.1 Regulatory protein SoxS BAC0371 Protein 6e-46 96
A464_4258 YP_008324851.1 Regulatory protein SoxS NC_002695.1.914293.p Protein 6e-46 96
A464_4258 YP_008324851.1 Regulatory protein SoxS CP000034.1.gene4505. Protein 1e-45 95
A464_4258 YP_008324851.1 Regulatory protein SoxS CP001918.1.gene327.p Protein 5e-45 94
A464_4258 YP_008324851.1 Regulatory protein SoxS CP000647.1.gene4499. Protein 3e-44 90
A464_4258 YP_008324851.1 Regulatory protein SoxS NC_010558.1.6276025. Protein 1e-21 50
A464_4258 YP_008324851.1 Regulatory protein SoxS CP001138.1.gene612.p Protein 5e-25 48
A464_4258 YP_008324851.1 Regulatory protein SoxS CP000647.1.gene1624. Protein 6e-20 44
A464_4258 YP_008324851.1 Regulatory protein SoxS CP001918.1.gene2033. Protein 3e-20 44
A464_4258 YP_008324851.1 Regulatory protein SoxS BAC0560 Protein 4e-20 43
A464_4258 YP_008324851.1 Regulatory protein SoxS NC_002695.1.917339.p Protein 4e-20 43
A464_4258 YP_008324851.1 Regulatory protein SoxS CP001138.1.gene1637. Protein 5e-20 43
A464_4258 YP_008324851.1 Regulatory protein SoxS CP000034.1.gene1596. Protein 4e-20 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A464_4258 YP_008324851.1 Regulatory protein SoxS VFG0585 Protein 5e-47 99
A464_4258 YP_008324851.1 Regulatory protein SoxS VFG1038 Protein 1e-21 50