Gene Information

Name : A464_3719 (A464_3719)
Accession : YP_008324313.1
Strain : Salmonella bongori N268-08
Genome accession: NC_021870
Putative virulence/resistance : Virulence
Product : type 1 fimbriae anchoring protein FimD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3705665 - 3708193 bp
Length : 2529 bp
Strand : -
Note : -

DNA sequence :
ATGACATGGACGCATCTTCCTCTGGGCAATAAGACCTCGCGTTTCACGCAGTCTGCGCTTGCGCTGATGGTAGCGGGGAC
GCTCCCCGCGTATGCGGGAACATTTAACCCGCGCTTTCTGGAGGATGTGCCGGGAATTGATCAGCACGTCGACCTTTCAA
TGTATGAATCTAATAAAGCTGAACAGCTTCCAGGTAAATACCGCGTCTCGGTGGTGGTCAACGACAAAAAAATGGCGTCT
CGCACCCTGGAGTTTAAGGCAGCGACAGAGGCGCAGCGCGCAAAAATGGGTGAATCCCTGGTGCCGTGCTTAAGCCGCGT
GCAGCTTGAAGATATGGGCGTGCGTATTGATAGCTTCCCGGCGCTGAAAATGGCGCCGCCTGAAGCCTGTGTTGCTTTTG
ACGACATTATTCCCCAGGCCGCCAGCCATTTCGATTTTGCAGACCAGACCCTGATCATGAGCTTCCCGCAGGCTGCGATG
AAGCAGACAGCGCGCGGTACGGTGCCAGAATCGCAGTGGGATGAAGGGGTGAATGCCTTGCTGGTGGATTATAACTTCTC
CGGCAGCAACGCCAGCTATGACGCGCACGACAGTGATACCAGCTACAACAGCGACAGCTACTATCTAAACCTGCGCAGCG
GTATGAACCTGGGGGCATGGCGGTTACGTAACTACAGTACCTGGACGCGAAACGACGGTAACAACAAATGGGATAACATT
GGTACATCCTTAAGTCGTGCCATTGTACCGCTGAAATCACAACTGACGTTGGGGGATACCTCCACCGCCGGTGATATTTT
TGACAGTGTTCAGATGCGCGGTGCGCAGTTAACTTCCGACGAAGAGATGCTGCCTGACAGCCAGCGCGGGTTTGCGCCCG
TCATCCGGGGTATTGCCAAAAGTAACGCCGAAGTCACCGTTGAGCAGAACAACTACGTTATTTACCGTACGTTTGTTCAG
CCGGGTGCGTTTGAAATTAACGACCTGTACCCAACTTCAAACAGCGGCGACCTGACGGTCACCATTAAAGAAGCGGACGG
CAGCGAGCAGAAGTTCGTTCAGCCGTTCTCTGCGGTGGCGATCCTCCAGCGTGAAGGCCATCTCAAGTACAGCCTTTCCG
TCGGGGAATACCGCGCCGGGAACTATAACAGCGCCGAGCCGAAATTCGGGCAGCTTGATGCCATGTACGGCCTGCCGTAT
GGCTTTACCGTTTACGGTGGTTCAATCTTCTCTGACGACTATTATTCGCTGGCGGGAGGATTAGGTAAAAACTTCGGCTA
TATCGGTGCGGTCTCCATCGATGTAACCCAGGCAAAAAGTAAGCTGGCAAATGAAGAGAATTCGGAAGGTCAGTCTTATC
GTTTCCTCTACTCCAAGAGCTTTAACAGCGGTACCGATTTCCGTCTGCTGGGTTACAAGTATTCGACCAGCGGTTATTAC
ACCTTCCAGGAAGCGACGGATGTCCGTAGCGATGCGGACAGCTCGTATAGCCAGTACCACAAACGTAGTCAGATTCAGGG
CAACGTAACGCAGCAGCTAGGCACCTGGGGGTCGGTCTATTTCAACGTCACCCAGCAGGATTACTGGAACGATGAAGGTA
AGCAACGTTCGCTGAATGCCGGTTACAACGGCCGTATTGGCCGCGTGAGCTACAGCGTTGCTTACACCTGGACGAAAAGC
CCGGAGTGGGATGAGAGCGATCGTCTGCTGTCATTCTCCATGTCGATTCCCCTGGGACGTGCATGGAGTAACTACCGCCT
CACGACCGATCAGCATGGGCGAACCAACCAGCAATTGGGCGTCAGCGGTGCCGTGCTGGAAGACCGCAACCTGAACTATA
GCGTGCAGGAAGGCTACGGCAGCAACGGCGAGGGTAACAGCGGCAGCGTGAACCTGGATTACCAGGGTGGCATGGGTAGC
GCCAGCCTGGGCTACAACTACAACCGTGACGGCCAGCAGGTGAACTACGGTCTGCGCGGCGGTGTGATAGCCCATAGTGA
AGGCATCACCCTTTCTCAGCCGCTGGGTGAATCCATGGCCATTATCTCCGCACCGGGCGCGCGCGGCGCGCATGTGATCA
ACAACGGCGGTGTGGAAGTGGACTGGATGGGTAATGCGGTTGTGCCTTACCTCACTCCGTACCGTGAAACGGAAGTCTCA
CTGCGAAGCGACAGTCTGAACAACCGGGTTGACCTGGATACCGCCTCCGTCAACGTGGTGCCGACGCGCGGCGCAATTGT
TCGTGCCCGCTTCGATACCCGCGTGGGCTATCGCGTGCTAATGAACCTGACGCAGGCGAATGGCAAAGCGGTGCCGTTTG
GTGCGACCGCCACGTTGCTGGATACCAAAAAAGAGTCCAGCAGTATCGTGGGTGAAGACGGGCAACTTTATATCAGCGGG
ATGCCGGAGAAAGGCGCCCTTCAGGTGAACTGGGGTAAAGACCAGGCACAGCAATGCCGCGTGGCGTTTACGCTGCCGGA
ACAACAGGATAATACCGGCGTAGTGATGGCGAATGCCGTTTGCCAGTAA

Protein sequence :
MTWTHLPLGNKTSRFTQSALALMVAGTLPAYAGTFNPRFLEDVPGIDQHVDLSMYESNKAEQLPGKYRVSVVVNDKKMAS
RTLEFKAATEAQRAKMGESLVPCLSRVQLEDMGVRIDSFPALKMAPPEACVAFDDIIPQAASHFDFADQTLIMSFPQAAM
KQTARGTVPESQWDEGVNALLVDYNFSGSNASYDAHDSDTSYNSDSYYLNLRSGMNLGAWRLRNYSTWTRNDGNNKWDNI
GTSLSRAIVPLKSQLTLGDTSTAGDIFDSVQMRGAQLTSDEEMLPDSQRGFAPVIRGIAKSNAEVTVEQNNYVIYRTFVQ
PGAFEINDLYPTSNSGDLTVTIKEADGSEQKFVQPFSAVAILQREGHLKYSLSVGEYRAGNYNSAEPKFGQLDAMYGLPY
GFTVYGGSIFSDDYYSLAGGLGKNFGYIGAVSIDVTQAKSKLANEENSEGQSYRFLYSKSFNSGTDFRLLGYKYSTSGYY
TFQEATDVRSDADSSYSQYHKRSQIQGNVTQQLGTWGSVYFNVTQQDYWNDEGKQRSLNAGYNGRIGRVSYSVAYTWTKS
PEWDESDRLLSFSMSIPLGRAWSNYRLTTDQHGRTNQQLGVSGAVLEDRNLNYSVQEGYGSNGEGNSGSVNLDYQGGMGS
ASLGYNYNRDGQQVNYGLRGGVIAHSEGITLSQPLGESMAIISAPGARGAHVINNGGVEVDWMGNAVVPYLTPYRETEVS
LRSDSLNNRVDLDTASVNVVPTRGAIVRARFDTRVGYRVLMNLTQANGKAVPFGATATLLDTKKESSSIVGEDGQLYISG
MPEKGALQVNWGKDQAQQCRVAFTLPEQQDNTGVVMANAVCQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 3e-162 44
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 2e-163 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A464_3719 YP_008324313.1 type 1 fimbriae anchoring protein FimD VFG0454 Protein 0.0 98
A464_3719 YP_008324313.1 type 1 fimbriae anchoring protein FimD VFG0876 Protein 4e-164 45
A464_3719 YP_008324313.1 type 1 fimbriae anchoring protein FimD VFG1645 Protein 9e-164 41
A464_3719 YP_008324313.1 type 1 fimbriae anchoring protein FimD VFG0446 Protein 7e-150 41
A464_3719 YP_008324313.1 type 1 fimbriae anchoring protein FimD VFG0912 Protein 9e-163 41