Gene Information

Name : A464_2886 (A464_2886)
Accession : YP_008323481.1
Strain : Salmonella bongori N268-08
Genome accession: NC_021870
Putative virulence/resistance : Virulence
Product : Manganese ABC transporter inner membranepermease protein SitD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2875925 - 2876773 bp
Length : 849 bp
Strand : +
Note : -

DNA sequence : 
ATGTTCTTAACTACGCTACTGGAGCCGTTCCAGTTTGATTTTATGGTGAACGCCCTTATGGTTTCGGTCATTGTAGCGAT
TCCCTGCGCCCTGCTATCCGTATTTTTAGTACTAAAAGGCTGGGCATTAATGGGCGACGCTATGAGCCATGCCGTATTTC
CCGGGGTCGTGCTGGCGTATATCATCGGTATTCCCCTGGCGATTGGCGCTTTTATTGCCGGGCTATTTTGCGCGATCGCG
ACCGGTTATCTGGACGACAACAGCCGTATCAAACGTGATACGGTAATGGGTATCGTCTTTTCAGGCATGTTTGGCGCAGG
CCTGGTGCTCTACGTCTCTATTGAATCGGAAGTGCATCTGGATCATATTCTGTTTGGCGATATGCTGGGCGTATCGCTGG
GGGATATTGTACAAACGGCGATAATTGCGCTGGGTATTGCGCTCATCATCGGACTGAAATGGAAAGATCTTCTGTTACAC
GCTTTTGACCCACACCAGGCAAAAGCCAGCGGTCTGAATATTCCTCTACTGCATTATGGCCTGCTGTGTATGATTGCGCT
GACTATCGTTGCCACGCTGAAATCGGTGGGGATTATTCTGTCGATCTCTTTGCTCATCGCCCCTGGCGCGATAGCCATTT
TGCTGACGCGACGCTTTGCGCACGCGCTGGGAATAGCGGTCAGCCTGTCAATAATTACCGCCTTTTTGGGCGTGTATCTG
TCATTTTATCTTGATAGCGCACCTGCGCCGACTATTGTTGTCTTATTTGCCATCGTATTTATTGTCGCGTTTACTTACTC
AACATGGCGCGACAGACGTGGCGAAACCGTACCCGCGGTACACGGTTAA

Protein sequence : 
MFLTTLLEPFQFDFMVNALMVSVIVAIPCALLSVFLVLKGWALMGDAMSHAVFPGVVLAYIIGIPLAIGAFIAGLFCAIA
TGYLDDNSRIKRDTVMGIVFSGMFGAGLVLYVSIESEVHLDHILFGDMLGVSLGDIVQTAIIALGIALIIGLKWKDLLLH
AFDPHQAKASGLNIPLLHYGLLCMIALTIVATLKSVGIILSISLLIAPGAIAILLTRRFAHALGIAVSLSIITAFLGVYL
SFYLDSAPAPTIVVLFAIVFIVAFTYSTWRDRRGETVPAVHG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-99 94
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-99 94
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-99 94
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-99 93
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-99 93
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-33 43
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-33 43
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-33 43
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-33 43
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-33 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A464_2886 YP_008323481.1 Manganese ABC transporter inner membranepermease protein SitD BAC0352 Protein 8e-100 94
A464_2886 YP_008323481.1 Manganese ABC transporter inner membranepermease protein SitD BAC0442 Protein 7e-57 54
A464_2886 YP_008323481.1 Manganese ABC transporter inner membranepermease protein SitD BAC0441 Protein 8e-33 44
A464_2886 YP_008323481.1 Manganese ABC transporter inner membranepermease protein SitD BAC0351 Protein 2e-33 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A464_2886 YP_008323481.1 Manganese ABC transporter inner membranepermease protein SitD VFG0528 Protein 7e-100 94
A464_2886 YP_008323481.1 Manganese ABC transporter inner membranepermease protein SitD VFG0527 Protein 1e-33 43