|
Name : smpB (M636_18610) Accession : YP_008317035.1 Strain : Genome accession: NC_021848 Putative virulence/resistance : Unknown Product : single-stranded DNA-binding protein Function : - COG functional category : - COG ID : - EC number : - Position : 2229010 - 2229495 bp Length : 486 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGCAAAGAAAAAATCAAAACAAAAAGCGGGTAGTAACACTATCGCGCTGAACAAAAAAGCTCGCCACGAGTATTTCAT TGAAGATGAAATCGAAGCTGGCTTGGAGCTCCAAGGTTGGGAAGTGAAAGCCCTTCGCCAAGGTAAAGCCAATATTTCTG AAAGTTACGTATTCATGCGTGACGGTGAAGCCTTTGTGAGTGGCATGACAATCACTCCTTTAAATCAGGCATCGACACAC GTAGTGGCGAACCCTACTCGTGTGCGCAAACTACTTATGAGTCGTCGTGAACTTGACAACCTACTCGGTCGCATTAACCG TGAAGGTATGACACTTACGGCACTCTCTCTGTACTGGTCTCGCTCTTGGGTGAAGATAAAAATAGGTGTAGCAAAAGGTA AAAAGCTTCACGATAAACGTACAGATCTTAAAGAAAAAGACTGGGCAAGAGAAAAAGCACGCGTAATGAAGAGCGCACTG CGTTAA Protein sequence : MAKKKSKQKAGSNTIALNKKARHEYFIEDEIEAGLELQGWEVKALRQGKANISESYVFMRDGEAFVSGMTITPLNQASTH VVANPTRVRKLLMSRRELDNLLGRINREGMTLTALSLYWSRSWVKIKIGVAKGKKLHDKRTDLKEKDWAREKARVMKSAL R |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 4e-58 | 87 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 2e-18 | 44 |
