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Name : lysS (M634_04450) Accession : YP_008312808.1 Strain : Genome accession: NC_021847 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 904568 - 906085 bp Length : 1518 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACTGATGCTGTTCAAAACGAAACTGTACAAGAAGAAAACAAGCTGATTGCTGAGCGCCGCGCTAAACTGGACGAAAT CCGAAAGAGCTGCAAAGCAAACGGCCACCCAAACGACTTCCGTCGTGACGCACTAGCGGGCGACCTTCAAAAAGAGTTCG GTGAAAAGACTAAGGAAGAGCTAGAAGAGCTTAACCACGTAGTAGCGATCGCTGGTCGTATTATGGCAAAACGTGGTCCA TTCCTAGTAATTCAAGAAACATCTGGCCGTATCCAAGCTTACGCAGACAAAGAAGTTCAAAAAGAACTGAAAGAGAAATA CCAAGGTCTTGATATCGGCGACATCATCGGTGTTAAAGGTGCGCTACACAAATCTGGTAAAGGCGACCTATACGTGAATA TGGAAGAGTACGAGTTGCTAACAAAAGCACTTCGTCCACTTCCTGAGAAGTTCCACGGTCTGACTGACCAAGAAATGCGT TACCGTCAGCGTTACGTAGACCTAATCGTTAACGAAGATTCTCGTAATGCATTCGTTGTACGTTCTAAAGTTATGTCTGC AATTCGTAACTTCATGATCTCTAAACAGTTCATGGAAGTTGAAACGCCAATGATGCACGTGATCCCTGGTGGTGCAAGTG CTCGTCCATTCATTACGCATCACAACGCGCTAGACATGCCAATGTACCTGCGTATTGCGCCTGAGCTATACCTGAAGCGT CTAGTTGTTGGTGGCTTTGATCGCGTATTCGAAATCAACCGTAACTTCCGTAACGAAGGTCTTTCTCCACGTCACAACCC AGAATTCACAATGATGGAATTCTACATGGCGTACGCGGATTACAAAGATCTAATGGACTTCACTGAGGAACTACTAAGCT CAGTAGCACTAGAAGTTCTAGGTTCGACATCAATGCCTTACGGTGAAGATACTGTTGAGTTTGGCGGTAAGTACGCTCGC ATGAGCATGTTTGAAGCAATCAAACACTACAACCCAGACCACGCTCAAATCCAAGCGCTAACGGAAGAAGATCTACAAAA CCGCGAACTAATGGTTTCTATCGCGAAATCTGTTCACGTTGAAGTAGAACCTTTCTGGACTTGTGGTCAGCTTCTTGAAG AGATCTTCGGTGAAACTGCAGAACCTAAACTAATGCAGCCTACGTTCATCACTGGCTACCCAGCGGATATTTCTCCACTG GCACGTCGTAGCGATGACAACCCATTCTTCACAGACCGCTTTGAGTTCTTCATCGGTGGCCGTGAAGTCGCAAACGGCTT CTCAGAGCTTAACGATGCAGAAGACCAAGACGCGCGCTTTAAAGCACAGGTTGAAGCAAAAGAATCTGGTGATGACGAAG CGATGTTCTACGATGCAGACTACATCACTGCACTAGAACACGGTCTACCACCAACAGCAGGTCAAGGTATCGGTATCGAC CGCCTAGTTATGCTGCTAACTAACACGCACACCATCCGTGACGTGATCTTGTTCCCTGCAATGCGCCCACAAGCGTAA Protein sequence : MTDAVQNETVQEENKLIAERRAKLDEIRKSCKANGHPNDFRRDALAGDLQKEFGEKTKEELEELNHVVAIAGRIMAKRGP FLVIQETSGRIQAYADKEVQKELKEKYQGLDIGDIIGVKGALHKSGKGDLYVNMEEYELLTKALRPLPEKFHGLTDQEMR YRQRYVDLIVNEDSRNAFVVRSKVMSAIRNFMISKQFMEVETPMMHVIPGGASARPFITHHNALDMPMYLRIAPELYLKR LVVGGFDRVFEINRNFRNEGLSPRHNPEFTMMEFYMAYADYKDLMDFTEELLSSVALEVLGSTSMPYGEDTVEFGGKYAR MSMFEAIKHYNPDHAQIQALTEEDLQNRELMVSIAKSVHVEVEPFWTCGQLLEEIFGETAEPKLMQPTFITGYPADISPL ARRSDDNPFFTDRFEFFIGGREVANGFSELNDAEDQDARFKAQVEAKESGDDEAMFYDADYITALEHGLPPTAGQGIGID RLVMLLTNTHTIRDVILFPAMRPQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-129 | 59 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 4e-78 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_008312808.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-129 | 59 |
