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Name : smpB (M634_05140) Accession : YP_008312938.1 Strain : Genome accession: NC_021847 Putative virulence/resistance : Unknown Product : single-stranded DNA-binding protein Function : - COG functional category : - COG ID : - EC number : - Position : 1059146 - 1059631 bp Length : 486 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGCAAAGAAAAAATCAAAACAAAAAGCGGGTAGTAACACTATCGCGCTGAACAAAAAAGCTCGCCACGAGTATTTCAT CGAAGATGAAATCGAAGCTGGCTTGGAGCTCCAAGGTTGGGAAGTGAAAGCCCTTCGCCAAGGTAAAGCCAATATTTCTG AAAGTTACGTATTCATGCGTGACGGTGAAGCCTTTGTGAGTGGCATGACAATCACTCCTTTAAATCAGGCATCGACACAC GTAGTGGCGAACCCTACTCGTGTGCGCAAACTACTTATGAGTCGTCGTGAACTTGATAACCTACTCGGTCGCATTAACCG TGAAGGTATGACACTTACGGCACTCTCTCTGTACTGGTCTCGCTCTTGGGTGAAGATAAAAATAGGTGTAGCAAAAGGTA AAAAGCTTCACGATAAACGTACAGATCTTAAAGAAAAAGACTGGGCAAGAGAAAAAGCACGCGTAATGAAGAGCGCACTG CGTTAA Protein sequence : MAKKKSKQKAGSNTIALNKKARHEYFIEDEIEAGLELQGWEVKALRQGKANISESYVFMRDGEAFVSGMTITPLNQASTH VVANPTRVRKLLMSRRELDNLLGRINREGMTLTALSLYWSRSWVKIKIGVAKGKKLHDKRTDLKEKDWAREKARVMKSAL R |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 4e-58 | 87 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 2e-18 | 44 |
