Gene Information

Name : SEEB0189_05370 (SEEB0189_05370)
Accession : YP_008307425.1
Strain : Salmonella enterica CFSAN000189
Genome accession: NC_021844
Putative virulence/resistance : Virulence
Product : fimbrial chaperone protein StdC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1036813 - 1037586 bp
Length : 774 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGAACAAGACCAACCATTTTAAGCGCCAGGCGCTTATCGCTTCGGTATTACTGGCTGCGCCGCTGGTATCGCACAGCGC
GATTGTGCCGGATCGTACCCGCGTTATTTTTAACGGCAATGAAAATTCAATCACCGTCACGCTGAAAAACGGCAACGCCA
CTCTGCCCTACCTCGCACAGGCGTGGCTGGAAGACGATAAGTTCGCCAAAGATACCCGCTATTTTACCGCCCTGCCGCCG
CTGCAGCGTATTGAGCCAAAATCCGACGGGCAGGTTAAAGTCCAGCCGTTACCAGCCGCGGCTGGCCTACCGCAGGACCG
GGAAAGTCTGTTTTATTTCAACGTGCGAGAAATTCCGCCGAAAAGCGATAAGCCTAATACGCTCCAGCTGGCGCTGCAAA
CGCGTATTAAGTTTTTCTACCGCCCGGTAGCCGTAGCCCGGCAGGTGGATAAGACGCACCCGTGGCAAACGAAGCTCACG
CTGACCTACCAGGGCGATGGTGTGATCTTCGACAACCCCACACCGTTTTACCTCGTCATCAGCAATGCCGGTAGTAAAGG
GAATGAAACCGCCTCCGGCTTTAAAAACCTGCTGATTGCCCCGCGTGAAAAAGTGACCTCTCCCATCAAAGGCGCCTCGC
TCGGCAGCTCGCCGGTGGTGAGCTACGTCGATGATTACGGCGGCCATCGCCTGCTGGTTTTCACCTGTTCAGGGAATACC
TGCAAGGTCAATGAGGAAAAAACCCGTGACGCTGAGAAGAAAGCGAATAAGTAA

Protein sequence : 
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPP
LQRIEPKSDGQVKVQPLPAAAGLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLT
LTYQGDGVIFDNPTPFYLVISNAGSKGNETASGFKNLLIAPREKVTSPIKGASLGSSPVVSYVDDYGGHRLLVFTCSGNT
CKVNEEKTRDAEKKANK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 6e-46 44
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 4e-39 43
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 6e-46 42
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 5e-46 42
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 9e-46 42
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 1e-45 41
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 7e-46 41
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 1e-45 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEB0189_05370 YP_008307425.1 fimbrial chaperone protein StdC VFG0885 Protein 2e-39 43
SEEB0189_05370 YP_008307425.1 fimbrial chaperone protein StdC VFG1547 Protein 5e-46 42
SEEB0189_05370 YP_008307425.1 fimbrial chaperone protein StdC VFG0896 Protein 4e-46 41