Gene Information

Name : SEEB0189_04885 (SEEB0189_04885)
Accession : YP_008307330.1
Strain : Salmonella enterica CFSAN000189
Genome accession: NC_021844
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 933065 - 933940 bp
Length : 876 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence :
ATGCAAAAGTTGGACGGCCTTAAGGCCTTTGAGCAACCCCTGGCTTCACTGCCACATCCGCTTCGAAAACTTATCCTTGC
ACGTCTTCGCAGTCTTACGCAGTACGAGCCGGTGATCGGCATTATGGGCAAAACTGGTGTCGGGAAGTCGTCACTCTGTA
ACGCCCTGTTTCAAGGGGAGGTAACACCTGTCAGTGATGTGGAGGCCTGCACACGCGATGTGCTGCGCTTCAGGCTCAGC
AGTGGCTCTCACAGCCTGCTACTGGTCGACTTACCCGGAGTGGGTGAAAGCGAGGCACGTGACGAGGAGTACACCACTTT
ATACCGCCGGATCTTGCCCGAACTGGATTTGGTATTATGGGTCATCAAGGCCGATGACAGAGCACTTTCAGTGGATGAAC
ACTTTTATCGCAAGGTGATGCTGGCGTATCAGCAGAGGGTTCTGTTCGTTGTTAATCAGGCTGACAAGGCCGAACCCTGC
CATCAGTGGAATACCACCAGCAATACACCATCTCATAGCCAACAGTCGACAATTGAGGCCAAGCGGAGCGCTGTACAGCA
GCTCTTCCTGCCGCACCATCCAGTCTGTGCTGTATCGGCCCGAACGGGTTGGGGGCTGGATGCGATGGTAGAGGCGATGA
TGCTTAGTCTGCCTGATCGGGCCACCAGCCCATTGACGACACAACTGCATGGAAGGCTCTGCACAGGTTCACTAAAAAAG
GAAGCCCGCGAGCGATTTAGCAATGCCGTAGATGAAATGATTGGCACTGTGGAATCGTCATCTTGTCTGCCTGCGCCTGT
AAGGGCTGTGATTCGAACCGTGCGGGAAGCCGTGGTGTCCGTTGCCCGTGCCGTCTGGGACTGGATTTTCTTCTGA

Protein sequence :
MQKLDGLKAFEQPLASLPHPLRKLILARLRSLTQYEPVIGIMGKTGVGKSSLCNALFQGEVTPVSDVEACTRDVLRFRLS
SGSHSLLLVDLPGVGESEARDEEYTTLYRRILPELDLVLWVIKADDRALSVDEHFYRKVMLAYQQRVLFVVNQADKAEPC
HQWNTTSNTPSHSQQSTIEAKRSAVQQLFLPHHPVCAVSARTGWGLDAMVEAMMLSLPDRATSPLTTQLHGRLCTGSLKK
EARERFSNAVDEMIGTVESSSCLPAPVRAVIRTVREAVVSVARAVWDWIFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL99256.1 unknown Not tested LEE Protein 2e-78 62
unnamed AAL08471.1 unknown Not tested SRL Protein 2e-78 62
sap NP_838477.1 hypothetical protein Not tested SHI-1 Protein 3e-78 62
Z1210 NP_286745.1 histone Not tested TAI Protein 3e-79 62
Z1650 NP_287153.1 hypothetical protein Not tested TAI Protein 3e-79 62
yeeP ADD91709.1 YeeP Not tested PAI-I AL862 Protein 4e-78 62
aec64 AAW51747.1 Aec64 Not tested AGI-3 Protein 4e-78 62
sap NP_708764.1 hypothetical protein Not tested SHI-1 Protein 9e-78 61
ECO103_3582 YP_003223441.1 hypothetical protein Not tested LEE Protein 5e-78 61
unnamed CAD66199.1 hypothetical protein Not tested PAI III 536 Protein 1e-78 61
unnamed AAK00473.1 unknown Not tested SHI-1 Protein 7e-78 61
APECO1_1093 YP_853113.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 8e-77 61
yeeP CAE85196.1 YeeP protein Not tested PAI V 536 Protein 6e-78 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEB0189_04885 YP_008307330.1 hypothetical protein VFG1062 Protein 9e-79 62
SEEB0189_04885 YP_008307330.1 hypothetical protein VFG1674 Protein 6e-79 61
SEEB0189_04885 YP_008307330.1 hypothetical protein VFG0654 Protein 4e-78 61