Gene Information

Name : SEEB0189_04710 (SEEB0189_04710)
Accession : YP_008307295.1
Strain : Salmonella enterica CFSAN000189
Genome accession: NC_021844
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 895662 - 896855 bp
Length : 1194 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :
ATGAAGCTGACAGCTCGTCAGGTTGAAACTGCAAAACCTAAAGATAAGCCCTACAAACTCGCTGATGGTGGTGGTCTTTA
CCTGCTGGTTAATCCCAACGGTAAAAGATACTGGCGTCTCAAATACCGTTCGCTAGGTAAAGAGAAGCTGCTCGCTATTG
GCGTTTACCCCGATGTTTCTTTAGCTGAAGCCAGAAATAAGCGTGAGGATGCAAAAAGGACATTAGCGGCTGGCAACGAT
CCTTCTCTTGAACGGAAAATTGAGAAACTTAGTCGTCAACAAGATGCAGAAAACTCTTTTGAGGCTATCACGCGGGAGTG
GTATCAGCGTCGCTATGACCGCTGGTCTGTCTCCTACCGCGAAGAAATGCTGAGAACCTTTGAAAAGGATGTGTTCCCTT
ATATCGGTCACCGGCCAATCAAAGATATCAAGCCGATGGAACTGCTTGCTGTTCTTTCAAAAATAGAAGCACGAGGAGCA
ACTGAGAAGGTCCGTAAGGTTCGCCAGCGTTGTGGAGAAGTCTGGAAGTATGCCGTTGTGACTGGCAGGGCTGAGTACAA
TCCAGCACCAGATCTAGCCAGCGCCGTGACTCCTCATGAGAAAGAGCACTATGCTTTTTTAACCCAGGATGAATTGCCAG
AGTTTCTTCGGACTCTGAACACCTATGCCGGTAGTGTGCTTGTTAAGATTGCGATGCAATTACTTATTCTGACAGGAGTA
AGGCCTGGGGAGTTGAGGCAAGCGGAGTGGCAGGAATTTGATTTTGAGCGGAAGGTTTGGAACGTGCCAGCAGAGCGAAT
GAAAATGCGCCGACCTCATATGGTTCCGTTATCAAGCCAGGCAATTGACCTGCTTAATCAGCTTAAACCCATGACTGGAG
CAGGAACGTTGCTGTTCCCAGGACGTAATAATCCTAAGAAACCGATGAGTGATATGGCATTAACTGTGTTGGTAAGGCGT
ATCGGCTATGCCGGGCGCGTTACAGGGCATGGATTCCGCCACACGATGAGTACCATTTTGCATGAGCAGGGATTCAACTC
GGCCTGGATTGAGTTACAACTGGCTCACGTCGATAAGAACTCAATTCGTGGAACGTATAACCATGCTCAATATCTGGAGG
GGAGGAAGGAGATGATGCAGTGGTATGGTGATTTTACTAGTAATTTAGGCAAGAAAGGGATTATTACAAGCTGA

Protein sequence :
MKLTARQVETAKPKDKPYKLADGGGLYLLVNPNGKRYWRLKYRSLGKEKLLAIGVYPDVSLAEARNKREDAKRTLAAGND
PSLERKIEKLSRQQDAENSFEAITREWYQRRYDRWSVSYREEMLRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARGA
TEKVRKVRQRCGEVWKYAVVTGRAEYNPAPDLASAVTPHEKEHYAFLTQDELPEFLRTLNTYAGSVLVKIAMQLLILTGV
RPGELRQAEWQEFDFERKVWNVPAERMKMRRPHMVPLSSQAIDLLNQLKPMTGAGTLLFPGRNNPKKPMSDMALTVLVRR
IGYAGRVTGHGFRHTMSTILHEQGFNSAWIELQLAHVDKNSIRGTYNHAQYLEGRKEMMQWYGDFTSNLGKKGIITS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int CAC39282.1 integrase Not tested LPA Protein 3e-132 64
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-132 64
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 7e-126 64
int AAC31482.1 CP4-like integrase Not tested LEE Protein 1e-131 64
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 1e-131 64
int ACU09430.1 integrase Not tested LEE Protein 1e-131 64
ECs4534 NP_312561.1 integrase Not tested LEE Protein 1e-131 64
int AAD44730.1 Int Not tested SHI-2 Protein 2e-130 63
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 3e-130 63
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-130 63
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 3e-130 63
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 2e-119 58
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 3e-76 44
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-75 42
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-75 42
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 5e-76 41
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-76 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-76 41
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-73 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 4e-75 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-75 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 4e-75 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 1e-75 41
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-75 41
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 5e-76 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 3e-76 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 3e-75 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 3e-76 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 3e-75 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 3e-75 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEB0189_04710 YP_008307295.1 integrase VFG0783 Protein 6e-132 64
SEEB0189_04710 YP_008307295.1 integrase VFG0598 Protein 1e-130 63
SEEB0189_04710 YP_008307295.1 integrase VFG1693 Protein 5e-76 41