Gene Information

Name : SEEB0189_03985 (SEEB0189_03985)
Accession : YP_008307154.1
Strain : Salmonella enterica CFSAN000189
Genome accession: NC_021844
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 751480 - 752139 bp
Length : 660 bp
Strand : -
Note : response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGCGAATTTTACTGGTAGAAGATGACACACTTATTGGCGATGGCATAAAAGCGGGCCTGAGTAAAATGGGTTTCAGCGT
CGACTGGTTTACCGAGGGACGCCCGGGCAAAGAGGCGCTTTACAGCGCGCCTTATGATGCGGTTATTTTAGATTTGACGC
TGCCAGGCATGGACGGACGGGATATTTTGCGCGAATGGCGCGAAAAGGGTAAACAGGAACCGGTACTGATCCTGACGGCG
CGCGACGCGTTAGCAGAGCGCGTCGAGGGGCTACGTCTGGGCGCCGATGACTATTTATGTAAACCTTTCGCGCTCATTGA
GGTCGCCGCCCGTCTGGAGGCGCTGGTACGCCGCGCCAGCGGTCAGGCCAGTAGCGAATTGCGCCACGGCCAGGTGACGC
TCAATCCAGGCAATCTCGTCGCGACGCTTGCCGGCGAACCACTGGCCTTAAAACCAAAAGAGTTCGCATTGCTGGAACTC
TTACTGCGCAACAAAGGTCGCGTGCTGCCGCGCAAGCTTATTGAAGAGAAGCTGTATAACTGGGATGACGACGTGTCCAG
CAATGCAGTGGAAGTCCATGTTCATCATTTACGCCGCAAGCTCGGCAGCGAATTTATTCGCACCGTACACGGCATCGGCT
ACACCCTGGGTGACGCATGA

Protein sequence : 
MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGKQEPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRASGQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLEL
LLRNKGRVLPRKLIEEKLYNWDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGYTLGDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-34 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEB0189_03985 YP_008307154.1 transcriptional regulator BAC0487 Protein 1e-34 46
SEEB0189_03985 YP_008307154.1 transcriptional regulator BAC0308 Protein 2e-30 43
SEEB0189_03985 YP_008307154.1 transcriptional regulator BAC0638 Protein 6e-26 42
SEEB0189_03985 YP_008307154.1 transcriptional regulator NC_002516.2.879194.p Protein 2e-23 41
SEEB0189_03985 YP_008307154.1 transcriptional regulator BAC0347 Protein 3e-28 41
SEEB0189_03985 YP_008307154.1 transcriptional regulator BAC0083 Protein 2e-30 41
SEEB0189_03985 YP_008307154.1 transcriptional regulator BAC0111 Protein 3e-28 41
SEEB0189_03985 YP_008307154.1 transcriptional regulator BAC0197 Protein 5e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEB0189_03985 YP_008307154.1 transcriptional regulator VFG0473 Protein 7e-35 47
SEEB0189_03985 YP_008307154.1 transcriptional regulator VFG1390 Protein 2e-26 41