Gene Information

Name : SEEB0189_17840 (SEEB0189_17840)
Accession : YP_008309859.1
Strain : Salmonella enterica CFSAN000189
Genome accession: NC_021844
Putative virulence/resistance : Virulence
Product : pili assembly chaperone protein SafB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3646375 - 3647088 bp
Length : 714 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGGCGGTAGCTTTGTTCGCCTCTAATTCTATGGTTTCAGTATATGCCGCCAGGCAGCAATTAAATTCAGCCACTAAATC
ATTCAGCGTGAAGCTGGGAGCTACACGGGTGATTTATCACGCTGGTACACCCGGCGCGACGCTCTCGGTGAGCAACCCGC
AGGATTACCCTATTTTGGTTCAGTCTTCAGTCAAAGCAGAAGACAAAAATTCGCCAGCCCCCTTTATGGTGATGCCGCCT
CTATTTCGTTTAGAAGCGAACCAGCAGAGTCAACTGCGTATTATCCGTACTGGTGGTGACATGCCAACGGATCGTGAAAC
TTTACAGTGGGTCTGTATAAAGGCGGTACCACCCGAAAATGAACCGTCGGATACACAGGCTAAGGGCGCGACCCTTGACC
TCAATTTGTCCATCAGCACCTGTGACAAGCTGATTTTCCGCCCGGATGCCGTGAAGGGGACGCCGGAAGATGTTGCAGGA
AATTTAAGATGGGTGGAGACGGGCAACAAACTTAAGGTAGAGAACCCCACCCCGTTTTACATGAATTTAGCCTCTGTCAC
AGTAGGGGGAAAGCCCATTACAGGGCTTGAGTATATCCCCCCCTTTGCTGACAAAACACTAAATATGCCAGGTGGCACTC
GTGGTGATGTCGAGTGGAAAATTATTACAGACTTAGGTGGTGAAAGTCATCCGTTCCACTACGTTTTTAAATAA

Protein sequence : 
MAVALFASNSMVSVYAARQQLNSATKSFSVKLGATRVIYHAGTPGATLSVSNPQDYPILVQSSVKAEDKNSPAPFMVMPP
LFRLEANQQSQLRIIRTGGDMPTDRETLQWVCIKAVPPENEPSDTQAKGATLDLNLSISTCDKLIFRPDAVKGTPEDVAG
NLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYIPPFADKTLNMPGGTRGDVEWKIITDLGGESHPFHYVFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
safB NP_454906.1 periplasmic fimbrial chaperone protein Not tested SPI-6 Protein 2e-99 88
afaB AAK16197.1 AfaB Virulence PAI-I AL862 Protein 9e-55 50
afaB ADD91742.1 putative AfaB-VIII periplasmic chaperone Not tested PAI-I AL862 Protein 9e-55 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEB0189_17840 YP_008309859.1 pili assembly chaperone protein SafB VFG0943 Protein 8e-54 52
SEEB0189_17840 YP_008309859.1 pili assembly chaperone protein SafB VFG0858 Protein 8e-53 51
SEEB0189_17840 YP_008309859.1 pili assembly chaperone protein SafB VFG0850 Protein 2e-55 49
SEEB0189_17840 YP_008309859.1 pili assembly chaperone protein SafB VFG0852 Protein 8e-54 48
SEEB0189_17840 YP_008309859.1 pili assembly chaperone protein SafB VFG0420 Protein 6e-44 41