Gene Information

Name : SEEB0189_17835 (SEEB0189_17835)
Accession : YP_008309858.1
Strain : Salmonella enterica CFSAN000189
Genome accession: NC_021844
Putative virulence/resistance : Virulence
Product : pilin outer membrane usher protein SafC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3643841 - 3646351 bp
Length : 2511 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :
ATGAAGTTCAAACAACCTGCCTTGCTACTGTTCATCGCGGGAGTGGTTCATTGCGCAAATGCGCACGCTTACACATTCGA
TGCATCAATGTTGGGCGATGCAGCGAAAGGGGTTGATATGTCGCTCTTTAACCAGGGGGTACAACAGCCAGGGACTTATC
GCGTGGACGTGATGGTGAATGGTAAACGTGTCGACACCCGTGATGTGGTGTTCAAATTGGAAAAGGATGGGCAAGGAACG
CCTTTTCTGGCTCCTTGTTTGACGGTCAGTCAGCTTTCACGCTACGGCGTAAAAACGGAAGATTACCCTCAGTTGTGGAA
AGCAGCAAAGACCCCAGATGAGTGTGCGGATCTGAGCGCCATTCCACAGGCTAAAGCGGTACTGGATATCAATAATCAGC
AACTGCAACTGAGTATTCCTCAGGTGGCGTTGCGTACGAAATTTAAGGGGATCGCTCCTGAAGATCTCTGGGATGATGGT
ATTCCGGCGTTTCTGATGAACTACAGTGCGAGGACAACGCAGACGGATTACAAAATGGATATGGAGAGGCGTGACAACTC
TTCCTGGGTACAACTGCAACCGGGAATCAATATAGGTGCGTGGCGTGTCCGCAATGCGACCAGCTGGCAGCGGAGTGGTC
AACAGTCGGGGAAGTGGCAGGCAGCATATACCTATGCTGAGCGTGGACTGTACTCACTAAAAAGTCGTCTGACTCTGGGG
CAAAAGACTTCGCAGGGGGAGATATTTGATAGTGTGCCATTTACCGGTGTGATGTTGGCATCGGATGACAACATGGTGCC
CTACAGTGAGCGGCAGTTTGCTCCGGTAGTGCGTGGGATTGCCCGCACGCAGGCTCGGGTGGAGGTCAAACAGAATGGTT
ACACCATTTACAACACCACCGTGGCGCCCGGACCGTTTGCACTGCGGGATCTGTCGGTAACAGACAGTAGTGGTGATCTG
CATGTCACCGTGTGGGAGGCCGATGGCAGTACACAAATGTTTGTGGTGCCGTATCAGACCCCGGCGATAGCACTGCACCA
GGGATATTTGAAGTACAGCCTGTTGGCGGGCCGATACCGATCGTCAGACTCTGCAACGGATAAGGCGCAGATCGCGCAGG
CTACGTTGATGTATGGTCTGCCGTGGAATCTCACTGCATACGGCGGTATACAGAGTGCAACGCACTATCAAGCTGCATTG
CTTGGTTTGGGGGGATCTCTCGGGCGGTGGGGGAGTTTATCTGTCGATGGAAGCGACACACACAGTCAGCGTCAGGGGGA
GGCGGTACAGCAAGGAGCCTCCTGGCGACTGCGTTACAGCAACCAGCTGACTGCGACGGGGACAAATTTTTTTCTGACGA
GATGGCAGTATGCCTCGCAGGGCTATAACACCCTATCCGATGTGCTCGACAGTTATCGACATGATGGCAACCGTCTATGG
TCGTGGCGGGAAAATTTGCAGCCGAGCTCGCGTACTACCCTGATGTTGAGTCAGTCATGGGGGAGGCATTTGGGCAATCT
GAGTTTAACCGGTTCCCGTACCGACTGGCGTAATCGCCCCGGTCATGATGACAGCTACGGACTGAGTTGGGGAACCTCTA
TCGGAGGGGGCTCGCTGTCATTGAACTGGAATCAAAACAGAACGCTGTGGCGCAATGGCGCGCACCGTAAAGAGAACATA
ACCAGCCTGTGGTTCAGTATGCCATTAAGCCGCTGGACGGGGAATAATGTAAGTGCTAGTTGGCAGATGACTTCACCATC
ACACGGTGGTCAGACGCAACAAGTGGGGGTCAACGGAGAGGCATTCAGTCAGCAACTGGATTGGGAGGTGCGTCAGAGTT
ACCGTGCCGATGCCCCGCCAGGTGGTGGTAATAACAGCGCATTGCACTTGGCATGGAATGGGGATTACGGCCTGTTAGGT
GGTGACTATAGCTACAGCCGGGCGATGCGCCAGATGGGAGTCAATATCGCGGGAGGTATAGTTATCCACCATCATGGTGT
GACGCTGGGGCAACCTTTGCAAGGCTCAGTGGCGCTGGTTGAAGCGCCAGGGGCCTCGGGGGTGCCAGTTGGCGGCTGGC
CTGGCGTTAAGACGGATTTTCGTGGCGACACCACAGTGGGCAACCTGAACGTCTATCAGGAGAATACAGTCAGCCTCGAT
CCGTCGCGACTACCGGATGACGCAGAGGTCACACAAACCGATGTGCGCGTGGTGCCAACCGAAGGGGCGGTGGTGGAAGC
GAAGTTTCACACTCGCATCGGGGCCAGGGCACTGATGACGCTGAAACGGGAAGATGGTAGCGCCATTCCTTTCGGGGCGC
AGGTTACAGTCAATGGGCAGGATGGCAGTGCTGCTCTGGTGGATACTGATAGCCAGGTTTATCTCACTGGTCTGGCGGAT
AAGGGCGAACTGACGGTGAAATGGGGAGCACAGCAATGTCGGGTTAACTACCAGCTACCTGCCCACAAGGGAATCGCGGG
CTTGTATCAAATGAGCGGTCTCTGCAGATAG

Protein sequence :
MKFKQPALLLFIAGVVHCANAHAYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT
PFLAPCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLSAIPQAKAVLDINNQQLQLSIPQVALRTKFKGIAPEDLWDDG
IPAFLMNYSARTTQTDYKMDMERRDNSSWVQLQPGINIGAWRVRNATSWQRSGQQSGKWQAAYTYAERGLYSLKSRLTLG
QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDL
HVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAL
LGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHDGNRLW
SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGAHRKENI
TSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGDYGLLG
GDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD
PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQDGSAALVDTDSQVYLTGLAD
KGELTVKWGAQQCRVNYQLPAHKGIAGLYQMSGLCR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
safC NP_454907.1 outer-membrane fimbrial usher protein Not tested SPI-6 Protein 0.0 98
afaC AAD44022.2 AfaC Virulence PAI-I AL862 Protein 0.0 50
afaC ADD91743.1 putative AfaC-VIII usher protein Not tested PAI-I AL862 Protein 0.0 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEB0189_17835 YP_008309858.1 pilin outer membrane usher protein SafC VFG0853 Protein 0.0 50
SEEB0189_17835 YP_008309858.1 pilin outer membrane usher protein SafC VFG0944 Protein 0.0 50
SEEB0189_17835 YP_008309858.1 pilin outer membrane usher protein SafC VFG0849 Protein 3e-174 46
SEEB0189_17835 YP_008309858.1 pilin outer membrane usher protein SafC VFG0857 Protein 1e-170 46
SEEB0189_17835 YP_008309858.1 pilin outer membrane usher protein SafC VFG0419 Protein 1e-164 44