Gene Information

Name : SEEB0189_16575 (SEEB0189_16575)
Accession : YP_008309609.1
Strain : Salmonella enterica CFSAN000189
Genome accession: NC_021844
Putative virulence/resistance : Virulence
Product : fimbrial chaperone protein FimC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3376133 - 3376846 bp
Length : 714 bp
Strand : -
Note : involved in type 1 fimbriae biosynthesis, interacts with FimH; Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :
ATGCAAAAGGTATTTTTTACCATGCTGAATAGTATAAAATTAGGCTTTATTGTTCTTCTCACGTTATTTACTTCGCTGAA
CGTACAGGCGGCGGGGGGGATTGCATTAGGCGCCACGCGCGTTATTTATCCCTCGGCGGCGAAACAGACTTCTCTGGCAA
TCAGTAATAGCGATACTCAAGAACGTTACCTCGTCAATTCATGGATCGAAAATAGCGCCGGGCAGAAAGAAAAAACGTTT
ATCGTTACGCCGCCTTTATTCGTCAGCGAGCCCAAAAGTGAAAACACGCTGCGTATTATCTACGCCGGGCAACCGCTACC
CGGGGATCGGGAGTCGTTATTCTGGATGAACGTGAAAGCCATCCCGTCGGTCGATAAAAGTCATATTGAAGGAAAAAACG
TTCTGCAACTGGCGATTCTGTCGCGCATCAAACTGTTCGTGCGTCCGGCGAATTTGCCGCAGACGCCGGAAGACGCGCCG
ACCTTGCTGAAATTTTCCCGTGTCGGCAACCATCTCAAGATAACCAACCCATCTGCTTATTACCTCACGCTGGTCAATAT
CAGCGTGGGCGCGAAAAAGATTGATAACGTGATGATCGCGCCAAAAAGCGACATGCAAATTCCCTTACCGACTGGCGCGC
AGGGCAGCGTGACATTTCAGACCGTCAATGATTACGGCGCATTGACGTCGGCGACAACGGCCAGTCTCGGTTAA

Protein sequence :
MQKVFFTMLNSIKLGFIVLLTLFTSLNVQAAGGIALGATRVIYPSAAKQTSLAISNSDTQERYLVNSWIENSAGQKEKTF
IVTPPLFVSEPKSENTLRIIYAGQPLPGDRESLFWMNVKAIPSVDKSHIEGKNVLQLAILSRIKLFVRPANLPQTPEDAP
TLLKFSRVGNHLKITNPSAYYLTLVNISVGAKKIDNVMIAPKSDMQIPLPTGAQGSVTFQTVNDYGALTSATTASLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 4e-48 51
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 7e-52 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEB0189_16575 YP_008309609.1 fimbrial chaperone protein FimC VFG0445 Protein 2e-103 99
SEEB0189_16575 YP_008309609.1 fimbrial chaperone protein FimC VFG1644 Protein 2e-48 51
SEEB0189_16575 YP_008309609.1 fimbrial chaperone protein FimC VFG0911 Protein 2e-48 50
SEEB0189_16575 YP_008309609.1 fimbrial chaperone protein FimC VFG0875 Protein 1e-53 47
SEEB0189_16575 YP_008309609.1 fimbrial chaperone protein FimC VFG0455 Protein 1e-40 42