Gene Information

Name : SEEB0189_12545 (SEEB0189_12545)
Accession : YP_008308824.1
Strain : Salmonella enterica CFSAN000189
Genome accession: NC_021844
Putative virulence/resistance : Virulence
Product : pathogenicity island 2 effector protein SseB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2545007 - 2545597 bp
Length : 591 bp
Strand : -
Note : necessary for the correct localization of SseC and SseD on the bacterial cell surface; Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGTCTTCAGGAAACATCTTATGGGGAAGTCAAAACCCTATTGTGTTTAAAAATAGCTTCGGCGTCAGCAACGCTGATAC
CGGGAGCCAGGATGACTTATCCCAGCAAAATCCGTTTGCCGAAGGGTATGGTGTTTTGCTTATTCTCCTTATGGTTATTC
AGGCTATCGCAAATAATAAATTTATTGAAGTCCAGAAGAACGCTGAACGTGCCAGAAATACCCAGGAAAAGTCAAATGAG
ATGGATGAGGTGATTGCTAAAGCAGCCAAAGGGGATGCTAAAACCAAAGAGGAGGTGCCTGAGGATGTAATTAAATACAT
GCGTGATAATGGTATTCTCATCGATGGTATGACCATTGATGATTATATGGCTAAATATGGCGATCATGGGAAGCTGGATA
AAGGTGGCCTACAGGCGATCAAAGCGGCTTTGGATAATGACGCCAACCGGAATACCGATCTTATGAGTCAGGGGCAGATA
ACAATTCAAAAAATGTCTCAGGAGCTTAACGCTGTCCTTACCCAACTGACAGGGCTTATCAGTAAGTGGGGGGAAATTTC
CAGTATGATAGCGCAGAAAACGTACTCATGA

Protein sequence : 
MSSGNILWGSQNPIVFKNSFGVSNADTGSQDDLSQQNPFAEGYGVLLILLMVIQAIANNKFIEVQKNAERARNTQEKSNE
MDEVIAKAAKGDAKTKEEVPEDVIKYMRDNGILIDGMTIDDYMAKYGDHGKLDKGGLQAIKAALDNDANRNTDLMSQGQI
TIQKMSQELNAVLTQLTGLISKWGEISSMIAQKTYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseB AAC28879.1 putative secreted protein Virulence SPI-2 Protein 9e-87 100
sseB CAA12185.1 SseB Virulence SPI-2 Protein 9e-87 100
sseB NP_456130.1 putative pathogenicity island effector effector protein Virulence SPI-2 Protein 1e-86 100
sseB NP_805069.1 pathogenicity island effector protein Virulence SPI-2 Protein 1e-86 100
sseB NP_460363.1 translocation machinery component Virulence SPI-2 Protein 1e-86 100
sseB YP_216406.1 secretion system effector protein SseB Virulence SPI-2 Protein 5e-86 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEB0189_12545 YP_008308824.1 pathogenicity island 2 effector protein SseB VFG0499 Protein 4e-87 100