Gene Information

Name : SEEB0189_12530 (SEEB0189_12530)
Accession : YP_008308821.1
Strain : Salmonella enterica CFSAN000189
Genome accession: NC_021844
Putative virulence/resistance : Virulence
Product : pathogenicity island 2 effector protein SseD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2542477 - 2543064 bp
Length : 588 bp
Strand : -
Note : may be involved in the translocation of effector proteins into the host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGGAAGCGAGTAACGTAGCACTGGTATTACCAGCGCCTTCCTTGTTAACACCTTCTTCCACTCCATCTCCCTCCGGGGA
GGGAATGGGTACTGAATCAATGCTTCTGTTATTTGATGATATCTGGATGAAGCTAATGGAGCTTGCCAAAAAGCTGCGCG
ATATCATGCGCAGCTATAACGTAGAAAAACAACGGCTGGCCTGGGAACTGCAAGTCAATGTTTTACAGACGCAAATGAAA
ACAATTGATGAAGCGTTTAGAGCATCAATGATTACTGCGGGTGGCGCAATGTTGTCGGGTGTACTGACGATAGGATTAGG
GGCCGTAGGCGGGGAAACCGGTCTTATAGCGGGTCAAGCCGTAGGCCACACAGCTGGGGGCGTCATGGGCCTGGGGGCTG
GTGTAGCGCAACGTCAAAGTGATCAAGATAAAGCGATTGCCGACCTGCAACAAAATGGGGCCCAATCTTATAATAAATCC
CTGACGGAAATTATGGAGAAAGCAACTGAAATTATGCAGCAAATCATCGGTGTGGGGTCGTCACTGGTCACGGTTCTTGC
TGAAATACTCCGGGCATTAACGAGGTAA

Protein sequence : 
MEASNVALVLPAPSLLTPSSTPSPSGEGMGTESMLLLFDDIWMKLMELAKKLRDIMRSYNVEKQRLAWELQVNVLQTQMK
TIDEAFRASMITAGGAMLSGVLTIGLGAVGGETGLIAGQAVGHTAGGVMGLGAGVAQRQSDQDKAIADLQQNGAQSYNKS
LTEIMEKATEIMQQIIGVGSSLVTVLAEILRALTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseD NP_460366.1 translocation machinery component Virulence SPI-2 Protein 1e-65 100
sseD CAA12188.1 SseD Virulence SPI-2 Protein 8e-66 100
sseD NP_456127.1 putative pathogenicity island effector protein Virulence SPI-2 Protein 2e-65 99
sseD NP_805072.1 pathogenicity island effector protein Virulence SPI-2 Protein 2e-65 99
sseD AAC28882.1 SseD Virulence SPI-2 Protein 1e-64 99
sseD YP_216409.1 secretion system effector protein SseD Virulence SPI-2 Protein 2e-63 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEB0189_12530 YP_008308821.1 pathogenicity island 2 effector protein SseD VFG0502 Protein 3e-66 100