Gene Information

Name : SEEB0189_12500 (SEEB0189_12500)
Accession : YP_008308815.1
Strain : Salmonella enterica CFSAN000189
Genome accession: NC_021844
Putative virulence/resistance : Virulence
Product : type III secretion system protein SsaH
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2539511 - 2539801 bp
Length : 291 bp
Strand : -
Note : Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
GTGGAATCATTGCTAAAATCTGAAGTTATTAGCGACGATGTTCGACGGTTGCTGCTGGAAATCATGTTTGCGGGCGTTAA
CCATAGCCTGATTTCCCAGGTACATGCGATGTTACCAGCGCTAACGGTTATTGTTCCGGATAAAAAATTACAGTTGGTAT
GTCTGGCATTATTGTTGGCGGGTTTAAATGAGCCGCTAAAAGCCGCGAAAATTTTATCGGATATTGATTTGCCAGAGGCT
ATGGCGCTGCGTCTGTTATTTCCTGCACCAAATGAGGGGTTTGAAAATTGA

Protein sequence : 
MESLLKSEVISDDVRRLLLEIMFAGVNHSLISQVHAMLPALTVIVPDKKLQLVCLALLLAGLNEPLKAAKILSDIDLPEA
MALRLLFPAPNEGFEN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaH NP_460372.1 type III secretion system apparatus protein Virulence SPI-2 Protein 1e-16 100
ssaH YP_216415.1 secretion system apparatus protein SsaH Virulence SPI-2 Protein 3e-26 100
ssaH CAA12194.1 SsaH Virulence SPI-2 Protein 7e-17 100
ssaH AAX49621.1 SsaH Virulence SPI-2 Protein 7e-17 100
ssaH NP_805078.1 pathogenicity island protein Virulence SPI-2 Protein 1e-16 99
ssaI AAC28875.1 SsaI Virulence SPI-2 Protein 4e-16 99
ssaH NP_456121.1 putative pathogenicity island protein Virulence SPI-2 Protein 1e-16 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEB0189_12500 YP_008308815.1 type III secretion system protein SsaH VFG0508 Protein 3e-17 100