Gene Information

Name : SEEB0189_12495 (SEEB0189_12495)
Accession : YP_008308814.1
Strain : Salmonella enterica CFSAN000189
Genome accession: NC_021844
Putative virulence/resistance : Virulence
Product : type III secretion system protein SsaI
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2539251 - 2539514 bp
Length : 264 bp
Strand : -
Note : Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
TTGAATATTTCTGATATGAGCGTAGTGCCTGTAAGTACTCAATCTTATGTAAAGTCCTCTGCAGAACCGAGCCAGGAGCA
AATTAATTTTTTTGAACAATTGCTGAAAGATGAAGCATCCACCAGTAACGCCAGTGCTTTATTACCGCAGGTTATGTTGA
CCAGACAAATGGATTATATGCAGTTAACGGTAGGCGTCGATTATCTTGCCAGAATATCAGGCGCAGCATCGCAAGCGCTT
AATAAGCTGGATAACATGGCATGA

Protein sequence : 
MNISDMSVVPVSTQSYVKSSAEPSQEQINFFEQLLKDEASTSNASALLPQVMLTRQMDYMQLTVGVDYLARISGAASQAL
NKLDNMA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaI NP_460373.1 type III secretion system apparatus protein Virulence SPI-2 Protein 7e-32 100
ssaI CAA12195.1 SsaI Virulence SPI-2 Protein 5e-32 100
ssaI AAX49622.1 SsaI Virulence SPI-2 Protein 5e-32 100
ssaI YP_216416.1 secretion system apparatus protein SsaI Virulence SPI-2 Protein 6e-31 97
ssaI NP_456120.1 putative pathogenicity island protein Virulence SPI-2 Protein 2e-30 94
ssaI NP_805079.1 pathogenicity island protein Virulence SPI-2 Protein 2e-30 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEB0189_12495 YP_008308814.1 type III secretion system protein SsaI VFG0509 Protein 2e-32 100