Gene Information

Name : SEEB0189_12455 (SEEB0189_12455)
Accession : YP_008308806.1
Strain : Salmonella enterica CFSAN000189
Genome accession: NC_021844
Putative virulence/resistance : Virulence
Product : type III secretion system protein SsaO
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2532159 - 2532536 bp
Length : 378 bp
Strand : -
Note : Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGGAAACTTTGCTGGAGATAATCGCGCGGCGTGAAAAGCAATTACGCGGCAAGCTTACCGTACTTGATCAGCAGCAACA
GGCGATTATTACGGAACAGCAGATTTGCCAGACGCGCGCTTTAGCAGTGTCTACCAGACTGAAAGAATTAATGGGCTGGC
AAGGTACGTTATCTTGTCATTTATTGTTGGATAAGAAACAACAAATGGCCGGGTTATTCACTCAGGCGCAGAGCTTTTTG
ACGCAACGGCAGCAGTTAGAGAATCAGTATCAGCAGCTTGTCTCCCGGCGAAGCGAATTACAGAAGAATTTTAATGCGCT
TATGAAAAAGAAAGAAAAAATTACTATGGTATTAAGCGATGCGTATTACCAAAGTTGA

Protein sequence : 
METLLEIIARREKQLRGKLTVLDQQQQAIITEQQICQTRALAVSTRLKELMGWQGTLSCHLLLDKKQQMAGLFTQAQSFL
TQRQQLENQYQQLVSRRSELQKNFNALMKKKEKITMVLSDAYYQS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaO CAA70538.1 secretion system apparatus Virulence SPI-2 Protein 5e-37 100
ssaO NP_460381.1 type III secretion system apparatus protein Virulence SPI-2 Protein 7e-37 100
ssaO YP_216424.1 secretion system apparatus protein SsaO Virulence SPI-2 Protein 4e-37 100
ssaO NP_456112.1 putative type III secretion protein Virulence SPI-2 Protein 2e-36 99
ssaO NP_805087.1 type III secretion protein Virulence SPI-2 Protein 2e-36 99
ssaO AAX49618.1 SsaO Virulence SPI-2 Protein 3e-31 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEB0189_12455 YP_008308806.1 type III secretion system protein SsaO VFG0516 Protein 2e-37 100