Gene Information

Name : SEEB0189_12430 (SEEB0189_12430)
Accession : YP_008308801.1
Strain : Salmonella enterica CFSAN000189
Genome accession: NC_021844
Putative virulence/resistance : Virulence
Product : type III secretion system protein SsaT
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2529097 - 2529876 bp
Length : 780 bp
Strand : -
Note : Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence :
ATGGCACAACAGGTAAATGAGTGGCTTATTGCATTGGCTGTGGCTTTTATTCGACCATTAAGCCTTTCTTTATTACTTCC
CCTATTAAAAAGTGGCAGTTTAGGGGCCGCTCTTTTACGTAATGGCGTGCTTATGTCACTTACCTTTCCCATATTACCAA
TCATTTACCAGCAGAAGATTATGATGCATATTGGTAAAGATTACAGTTGGTTAGGGTTAGTCACCGGAGAGGTGATTATT
GGTTTTTTAATTGGGTTTTGTGCGGCGGTTCCCTTTTGGGCCGTTGATATGGCGGGGTTTCTGCTTGATACTTTACGTGG
CGCGACAATGGGTACGATATTCAATTCTACAATAGAAGCTGAAACCTCACTTTTTGGCTTGCTTTTCAGCCAGTTCTTGT
GTGTTATTTTCTTTATAAGCGGCGGCATGGAGTTTATATTAAACATTCTGTATGAGTCATATCAATATTTACCACCAGGG
CGTACTTTATTATTTGACCAGCAATTTTTAAAATATATCCAGGCAGAGTGGAGAACGCTTTATCAATTATGTATCAGCTT
CTCTCTTCCTGCCATAATATGTATGGTATTAGCCGATCTGGCTTTAGGTCTTTTAAATCGGTCGGCACAACAATTGAATG
TGTTTTTCTTCTCAATGCCGCTCAAAAGTATATTGGTTCTACTGACGCTCCTGATCTCATTCCCTTATGCTCTTCATCAC
TATTTGGTTGAAAGCGATAAATTTTATATTTATCTAAAAGACTGGTTTCCATCTGTATGA

Protein sequence :
MAQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVII
GFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPG
RTLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
YLVESDKFYIYLKDWFPSV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaT NP_805092.1 type III secretion protein Virulence SPI-2 Protein 2e-98 99
ssaT NP_460386.1 type III secretion system apparatus protein Virulence SPI-2 Protein 2e-98 99
ssaT YP_216429.1 secretion system apparatus protein SsaT Virulence SPI-2 Protein 1e-98 99
ssaT CAA68201.1 secretion system apparatus, SsaT Virulence SPI-2 Protein 1e-98 99
ssaT NP_456107.1 putative type III secretion protein Virulence SPI-2 Protein 2e-98 99
YPO0272 YP_002345354.1 type III secretion apparatus protein Virulence Not named Protein 5e-45 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEB0189_12430 YP_008308801.1 type III secretion system protein SsaT VFG0521 Protein 8e-99 99