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Name : SEEB0189_12425 (SEEB0189_12425) Accession : YP_008308800.1 Strain : Salmonella enterica CFSAN000189 Genome accession: NC_021844 Putative virulence/resistance : Virulence Product : secretion system apparatus protein SsaU Function : - COG functional category : - COG ID : - EC number : - Position : 2528042 - 2529100 bp Length : 1059 bp Strand : - Note : member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli; Derived by automated computational analysis using gene prediction method: GeneMarkS+. DNA sequence : ATGAGCGAGAAAACAGAACAGCCTACAGAAAAGAAATTACGTGATGGCCGTAAGGAAGGGCAGGTTGTCAAAAGTATTGA AATAACATCATTATTTCAGCTGATTGCGCTTTATTTGTATTTTCATTTCTTTACTGAAAAGATGATTTTGATACTGATTG AGTCAATAACTTTCACATTACAATTAGTAAATAAACCATTTTCTTATGCATTAACGCAATTGAGTCATGCTTTAATAGAG TCACTGACTTCTGCACTGCTGTTTCTGGGCGCTGGGGTAATAGTTGCTACTGTGGGTAGCGTGTTTCTTCAGGTGGGGGT GGTTATTGCCAGCAAGGCCATTGGTTTTAAAAGCGAGCATATAAATCCGGTAAGTAATTTTAAGCAGATATTCTCTTTAC ATAGCGTAGTAGAATTATGTAAATCCAGCCTAAAAGTTATCATGCTATCTCTTATCTTTGCCTTTTTCTTTTATTATTAT GCCAGTACTTTTCGGGCGCTACCGTACTGTGGGTTAGCCTGTGGCGTGCTTGTGGTTTCTTCTTTAATAAAATGGTTATG GGTAGGGGTGATGGTTTTTTATATCGTCGTTGGCATACTGGACTATTCTTTTCAATATTATAAGATTAGAAAAGATCTAA AAATGAGTAAAGATGACGTAAAACAGGAGCATAAAGATCTGGAGGGCGACCCTCAAATGAAGACGCGGCGTCGGGAAATG CAGAGTGAAATACAAAGTGGGAGTTTAGCTCAATCTGTTAAACAATCTGTTGCGGTAGTGCGTAATCCAACGCATATTGC GGTTTGTCTTGGCTATCATCCCACCGATATGCCAATACCACGTGTCCTGGAAAAAGGCAGTGATGCTCAAGCTAACTATA TTGTTAACATCGCTGAACGCAACTGCATCCCCGTTGTTGAAAATGTTGAGCTGGCCCGCTCATTATTTTTTGAAGTGGAA CGCGGAGATAAAATTCCTGAAACGTTATTTGAACCCGTTGCAGCCTTGTTACGTATGGTGATGAAGATAGATTATGCGCA TTCTACCGAAACACCATAA Protein sequence : MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQLVNKPFSYALTQLSHALIE SLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYY ASTFRALPYCGLACGVLVVSSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEVE RGDKIPETLFEPVAALLRMVMKIDYAHSTETP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ssaU | CAA68202.1 | secretion system apparatus, SsaU | Virulence | SPI-2 | Protein | 3e-159 | 100 |
| ssaU | NP_460387.1 | secretion system apparatus protein SsaU | Virulence | SPI-2 | Protein | 3e-159 | 100 |
| ssaU | YP_216430.1 | secretion system apparatus protein SsaU | Virulence | SPI-2 | Protein | 3e-157 | 99 |
| ssaU | NP_456106.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 6e-159 | 99 |
| ssaU | NP_805093.1 | secretion system apparatus protein SsaU | Virulence | SPI-2 | Protein | 6e-159 | 99 |
| YPO0273 | YP_002345355.1 | secretion system apparatus protein SsaU | Virulence | Not named | Protein | 9e-72 | 48 |
| escU | AFO66307.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 6e-52 | 41 |
| escU | AFO66403.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 6e-52 | 41 |
| unnamed | AAL06357.1 | EscU | Virulence | LEE | Protein | 5e-49 | 41 |
| escU | CAI43886.1 | EscU protein | Virulence | LEE | Protein | 2e-50 | 41 |
| escU | CAC81850.1 | EscU protein | Virulence | LEE II | Protein | 2e-50 | 41 |
| escU | AAK26703.1 | EscU | Virulence | LEE | Protein | 2e-50 | 41 |
| escU | YP_003223487.1 | T3SS structure protein EscU | Virulence | LEE | Protein | 3e-50 | 41 |
| escU | AAL57530.1 | EscU | Virulence | LEE | Protein | 2e-50 | 41 |
| escU | YP_003232141.1 | secretion system apparatus protein SsaU | Virulence | LEE | Protein | 2e-50 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SEEB0189_12425 | YP_008308800.1 | secretion system apparatus protein SsaU | VFG0522 | Protein | 1e-159 | 100 |
