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Name : smpB (SEEB0189_06395) Accession : YP_008307625.1 Strain : Salmonella enterica CFSAN000189 Genome accession: NC_021844 Putative virulence/resistance : Unknown Product : single-stranded DNA-binding protein Function : - COG functional category : - COG ID : - EC number : - Position : 1254268 - 1254795 bp Length : 528 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGGGTGTTTTCGATATCAGATTACCTATGAATTCACGACACTTATGACGAAGAAAAAAGCACATAAACCGGGCTCAGC CACCATCGCGCTGAATAAGCGCGCCCGGCACGAATACTTTATCGAAGAAGAGTTCGAGGCTGGTCTCGCCCTGCAAGGCT GGGAAGTAAAATCTCTGCGCGCAGGAAAAGCCAATATCGGCGACAGTTACGTTATTCTCAAAGATGGCGAGGCCTGGCTG TTTGGCGCAAACTTTACGCCGATGGCGGTCGCCTCGACACATGTTGTATGCGACCCAACCCGAACCCGCAAACTGTTGTT AAATCAGCGTGAGCTTGATTCGCTGTATGGCCGTATTAATCGTGAAGGTTATACTGTCGTCGCGCTTTCTCTGTACTGGA AAAATGCCTGGTGCAAAGTGAAGATCGGCGTGGCGAAAGGTAAAAAACAACATGATAAACGTTCCGATCTTAAAGAACGT GAGTGGCAACTGGATAAAGCACGCATTATGAAAAATGCAGGCCGATAA Protein sequence : MGCFRYQITYEFTTLMTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKDGEAWL FGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSDLKER EWQLDKARIMKNAGR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 6e-51 | 71 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 7e-25 | 47 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 7e-21 | 43 |
