Gene Information

Name : SEEB0189_05740 (SEEB0189_05740)
Accession : YP_008307499.1
Strain : Salmonella enterica CFSAN000189
Genome accession: NC_021844
Putative virulence/resistance : Virulence
Product : chaperone protein SicA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1111141 - 1111638 bp
Length : 498 bp
Strand : +
Note : surface presentation of antigen protein SpaT; involved in the stabilization of SipB and SipC; Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :
ATGGATTATCAAAATAATGTCAGCGAAGAACGTGTTGCGGAAATGATTTGGGATGCCGTTAGTGAAGGCGCCACGCTAAA
AGACGTTCACGGGATCCCTCAAGATATGATGGACGGTTTATATGCTCATGCTTATGAGTTTTATAACCAGGGACGACTGG
ATGAAGCTGAGACATTCTTTCGTTTCTTATGCATTTATGATTTTTACAACCCCGATTACACCATGGGACTGGCGGCGGTA
TGCCAACTGAAAAAACAATTTCAGAAAGCATGTGACCTTTATGCAGTAGCGTTTACGTTACTTAAAAATGATTATCGCCC
CGTTTTTTTTACCGGGCAGTGTCAATTATTAATGCGTAAGGCGGCAAAAGCCAGACAGTGTTTTGAACTTGTCAATGAAC
GTACTGAAGATGAGTCTCTGCGGGCAAAAGCGTTGGTCTATCTGGAGGCGCTAAAAACGGCGGAGACAGAGCAGCACAGT
GAACAAGAAAAGGAATAA

Protein sequence :
MDYQNNVSEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAV
CQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYLEALKTAETEQHS
EQEKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sicA YP_217805.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 6e-73 100
spaT NP_457280.1 unknown function Virulence SPI-1 Protein 6e-73 100
spaT NP_806489.1 hypothetical protein Virulence SPI-1 Protein 6e-73 100
sicA NP_461807.1 secretion chaperone Virulence SPI-1 Protein 6e-73 100
sycB AAS66850.1 SycB Not tested SSR-1 Protein 4e-34 55
sicA AAS66869.1 SicA Virulence SSR-2 Protein 6e-28 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEB0189_05740 YP_008307499.1 chaperone protein SicA VFG0547 Protein 2e-73 100
SEEB0189_05740 YP_008307499.1 chaperone protein SicA VFG0988 Protein 4e-44 60
SEEB0189_05740 YP_008307499.1 chaperone protein SicA VFG2451 Protein 7e-46 60
SEEB0189_05740 YP_008307499.1 chaperone protein SicA VFG1769 Protein 3e-40 52