Gene Information

Name : M645_04470 (M645_04470)
Accession : YP_008304327.1
Strain : Listeria monocytogenes J1926
Genome accession: NC_021840
Putative virulence/resistance : Virulence
Product : ATP-dependent Clp protease ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 889646 - 891814 bp
Length : 2169 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :
ATGAACTGTGAAAAATGTAATCAAAATCCAGCAACAATCCAACTATATATGAATATTAATGGCAAGCGTGTAGAAATGCC
GCTTTGTGCCTCTTGTTATGCAGAAGTTAGAAATCAAGCAAACTTTGGGGCGAATGAGTTCCCAGGAGCAAGCGGTTCCC
CGTTTGATGATATTTTCCGTCAATTGAGTGGTGCTGCTAGTCAAGCAAACCGTGAACAAAGAAGCCAAGCACAAGTACAA
ACACAAACTGCTGGTGGCGGCAATGGTTTACTAGATGAATTTGGAACAAACTTAACAGATATGGCGAAAAATGAGCAACT
CGACCCTGTCATCGGTCGTGACAAAGAAATTAAACGCGTCATTGAAATATTAAACCGCCGTAATAAAAATAATCCAGTCT
TAATTGGTGAACCAGGTGTTGGTAAAACAGCTGTCGTCGAAGGACTTGCAAATGCGATTGTCGCAGGAGAAGTTCCAAGC
AAATTAATGAACAAAGAAGTTATCTTATTAGATGTCGCTTCACTTGTTTCTGGAACAGGGATACGCGGTCAATTTGAAGA
ACGCATGAAACAACTGATTAAAGAACTACAAGAACGTAAAAACACGATTCTCTTTATTGATGAAGTGCATACGATTGTTG
GGGCAGGTTCCGCAGAAGGCTCGATGGATGCAGGAAACATTCTAAAACCAGCTCTAGCTCGTGGCGATTTACAAATGATT
GGTGCTACTACACTAAAAGAATACCGCACAATCGAAAAAGATGCCGCACTTGAGCGCCGTTTCCAACCAGTAACTGTAAG
CGAACCATCCACAAAAGAAACGCTAACTATTTTAAATGGTTTAAAACCAAAATATGAAGATTTCCATGAAGTAGTTTATT
CACCAGAAGCACTAACAGCAGCAGTTGAATTAAGCGCTCGTTATATCCAAGATCGTCATTTGCCAGATAAAGCAATTGAT
TTAATGGATGAAGTTGGCTCGAAATATAATCTATCCATTGAAAAACTGGACGAAAATACGGTGAGCGAACGTGTTGCCCG
TTTAGAAGATGAAAAAAATCAAGCTCTTCAAATGGAAGACTACGAAAAGGCAGCCAAAGTTCGTGATGAAATTACTCGCT
TAGAAGAAAATAAAACAAATAACTCCTTCTCAGAGCGTCCAGTCATCCAAGCATCCGACATCCAAGCAATTATTGAAGAA
AAAACAGGTATTCCAGTAGGACGCTTACAAGAAGACGAGCAATCTAAAATGAAGAACTTAGAAAGTAACTTAACTGGAAA
AGTCATTGGTCAAGAAGATGCTGTAAGAAAAGTAGCTAAAGCAATTCGTCGTAGCCGTGTTGGCCTCAAATCAAAAAATC
GCCCAATTGGTTCCTTCCTATTTGTTGGACCAACTGGTGTCGGAAAAACAGAACTTGGACGCACGCTAGCTCGTGAATTG
TTTGGTACTAGTGAAGCGATGATTCGTTTAGACATGAGTGAATTCATGGAAAAACACAGCGTCTCTAAATTAATCGGTTC
CCCTCCTGGCTATGTTGGTCACGAAGAAGCTGGACAATTAACAGAAAAAGTTCGTCGCAATCCGTATAGCATCATTTTGT
TAGACGAAATCGAAAAAGCACATCCAGACGTTCAACATATGTTCCTGCAAATTTTAGAAGACGGTCGACTAACTGATTCA
CAAGGACGTACAGTGAGCTTTAAAGATACAGTCATCATTATGACAAGTAACGCTGGCGCAACTGACACAGAAGCTTCGGT
CGGCTTTAATACAACAACCGAATCAAAACTTGAAAAAGGTTCTGACATCTATGCAAAATTAGGCGCATACTTCAAACCAG
AATTCTTAAACCGTCTAGACAGCGTCATTGAATTTAAATCCCTAGAAAAAGACGATTTAGTACAAATCATCGACTTAATG
CTCGTTGATTTAAATGAAATGCTCGCTCAAGAAGATGTGACAATCGATGTTTCTAAAGAAGTAAAAGAACATTTGATTGA
CCTTGGTTATGACCCTAAATTCGGAGCACGTCCACTACGCCGGACTATCCAAGAACACCTAGAAGATGCGATTGCCGACA
GTCTAATTGAACAACCAGAAGCAAAACATCTTGTTGCAACCCTTAACGAAAATAAAGAAATTACTATAACAGAACAAGTA
ACAGTGTAA

Protein sequence :
MNCEKCNQNPATIQLYMNINGKRVEMPLCASCYAEVRNQANFGANEFPGASGSPFDDIFRQLSGAASQANREQRSQAQVQ
TQTAGGGNGLLDEFGTNLTDMAKNEQLDPVIGRDKEIKRVIEILNRRNKNNPVLIGEPGVGKTAVVEGLANAIVAGEVPS
KLMNKEVILLDVASLVSGTGIRGQFEERMKQLIKELQERKNTILFIDEVHTIVGAGSAEGSMDAGNILKPALARGDLQMI
GATTLKEYRTIEKDAALERRFQPVTVSEPSTKETLTILNGLKPKYEDFHEVVYSPEALTAAVELSARYIQDRHLPDKAID
LMDEVGSKYNLSIEKLDENTVSERVARLEDEKNQALQMEDYEKAAKVRDEITRLEENKTNNSFSERPVIQASDIQAIIEE
KTGIPVGRLQEDEQSKMKNLESNLTGKVIGQEDAVRKVAKAIRRSRVGLKSKNRPIGSFLFVGPTGVGKTELGRTLAREL
FGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGHEEAGQLTEKVRRNPYSIILLDEIEKAHPDVQHMFLQILEDGRLTDS
QGRTVSFKDTVIIMTSNAGATDTEASVGFNTTTESKLEKGSDIYAKLGAYFKPEFLNRLDSVIEFKSLEKDDLVQIIDLM
LVDLNEMLAQEDVTIDVSKEVKEHLIDLGYDPKFGARPLRRTIQEHLEDAIADSLIEQPEAKHLVATLNENKEITITEQV
TV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 2e-155 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
M645_04470 YP_008304327.1 ATP-dependent Clp protease ATP-binding protein VFG0080 Protein 0.0 97
M645_04470 YP_008304327.1 ATP-dependent Clp protease ATP-binding protein VFG0079 Protein 5e-159 53